Idiomarina abyssalis: K5X84_00125
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Entry
K5X84_00125 CDS
T07548
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03030
DNA replication
iab03410
Base excision repair
iab03420
Nucleotide excision repair
iab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K5X84_00125 (polA)
03410 Base excision repair
K5X84_00125 (polA)
03420 Nucleotide excision repair
K5X84_00125 (polA)
03440 Homologous recombination
K5X84_00125 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iab03032
]
K5X84_00125 (polA)
03400 DNA repair and recombination proteins [BR:
iab03400
]
K5X84_00125 (polA)
Enzymes [BR:
iab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K5X84_00125 (polA)
DNA replication proteins [BR:
iab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K5X84_00125 (polA)
DNA repair and recombination proteins [BR:
iab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
K5X84_00125 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K5X84_00125 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
DUF4783
Motif
Other DBs
NCBI-ProteinID:
QZN90970
LinkDB
All DBs
Position
27216..29981
Genome browser
AA seq
921 aa
AA seq
DB search
MATSVPENPFILVDGSSYLFRAFHAPPHLTNSKGEPTGAVYGVVNMLRSLLKRYKPSHMA
VVFDAKGKTFRSDIYQEYKANRPPMPDDLRTQIEPLHEIVKAMGLPLLCIDDVEADDVIG
TLARQAGEKGRFTLISTSDKDMAQLVNEHVMLINTMTDTLLDPEGVEKKFGVKPEQIIDY
LALMGDSSDNIPGLPKVGEKTAQAMLQQIPSIDAIYENVDAVSELSFRGAKTMPAKLNEY
KDQLLMSRELATIKLDVAMELQPEELTIQTADSEKLAELYSRCEFRRWLGELMESGAATD
QALGKAEVEKPVSDINRDAYRVLMTEEEVSDYLTSLKKCDYFAFDTETTSLNYMQAELVG
VSLAAAPGEAVYIPVGHDYMEAPEQVGRDWLLEQLKPLLEADKPQKVGQNLKYDAHILRR
YKIRLGGILNDTMLASYVFNSVGSRHDMDTLSLHYLNHKTISFEEIAGKGAKQLTFNQID
LEQAGPYAAEDADITFRLHDVLWNKVKDVGSELHSVLTDIEVPLVPVLCDMEQYGVRIDA
NLLGKQSQEITEKLDALEKKAFEIAGEEFNLGSTKQLQRIFFEKLELPVVKKTPKGAPST
AEEVLHELAHDYPLPDVILQHRSLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATGRL
SSTDPNLQNIPIRTAEGRRVRQAFVPEQGYKIVAIDYSQIELRIMAHLSQDASLLKAFAE
GLDIHRATAGEVFGCKADEVTDDQRRQAKAVNFGLIYGMSAFGLARQLGIARHEAQHYMD
KYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAAINAPMQ
GTAADIIKKAMLKVADWIDSNKCQDDVRMLMQVHDELVFEIKEAKLDDYIAQLTDVMEKA
ASLDVPLIAEAGKGNNWDEAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggccacatctgttcccgaaaatccgtttattctcgtcgatggttcctcttatttgttt
cgcgcctttcatgcgccaccgcacttaaccaattccaaaggcgagccaaccggcgctgtt
tatggtgttgttaatatgctgagaagcttattgaaacgctataaacccagccatatggcg
gtggttttcgatgcgaaaggtaaaaccttccgtagcgatatttaccaggagtacaaagca
aaccgtccgccaatgcccgatgacttacgcacacaaattgaacctttgcatgaaattgtg
aaggcaatggggctgccgctgttatgcattgacgatgttgaagcggatgatgttattggc
actctggcccgacaggccggagaaaaagggcgctttacgttaattagtaccagtgacaaa
gacatggcacagctggttaatgaacatgtcatgctaattaacacaatgactgacaccttg
ctggatcctgaaggtgtagagaaaaaattcggcgtgaagccggagcagatcattgattat
ttagcactaatgggcgatagctccgataatattccggggctgccaaaagttggcgaaaag
acggcgcaggcaatgttgcaacaaattccaagcattgatgccatttatgaaaatgtcgat
gcggtaagcgaactgtcctttcgtggcgcgaaaaccatgccggcgaaactgaacgagtat
aaagatcagttgcttatgtcccgggaattggcaaccattaagcttgatgtggctatggag
ttgcagccggaagagctgactatacaaacggcagacagcgaaaaactggctgagttatat
agccggtgtgaatttcgccgttggcttggtgagcttatggaaagtggggcagcaactgac
caggctttgggtaaagctgaagttgaaaagcccgtcagcgacattaaccgggacgcttac
cgtgttttaatgacggaagaggaagtgagtgattatttaacctcacttaagaaatgtgac
tactttgcttttgataccgaaacgacgagcctgaattatatgcaggccgagcttgtcggc
gtgtcgttagctgccgccccgggtgaagcggtctatattccggttggccatgactatatg
gaagcccctgagcaagtcggtcgcgactggcttctggagcagttgaagcctctactcgaa
gcggacaagccgcagaaggttgggcaaaacctgaagtacgatgcccatattttgcgccgt
tataaaattcgtttaggcggtattttaaatgacaccatgctggcatcttacgtatttaat
agtgtcggctcccgccatgacatggacaccttgagcctgcattacctgaaccacaagacg
atcagtttcgaagagatcgccggtaaaggtgctaagcagctgacctttaatcaaatcgat
cttgaacaggcgggcccatacgcggccgaagatgcagacattacgttccgattgcatgat
gtattgtggaacaaggtaaaagatgttggcagcgaactgcacagtgtactgactgatatt
gaagtacctttagttcccgtattgtgcgatatggaacaatatggtgtccgtatagatgct
aatttactgggtaaacaaagtcaggaaattaccgagaagcttgacgctttagagaaaaaa
gcgtttgagattgccggtgaggagttcaacttaggttcgaccaagcagttgcaacgcatt
ttcttcgaaaagctggaacttccggttgtgaaaaagaccccgaagggggctccgtcaacg
gcggaggaagttttgcatgagctggcgcatgactaccctttaccagatgttattttacag
caccgaagcttgtcgaagctaaaatccacttataccgataagctgccgaagatgatcaac
ccggacaccggccgggtacacacctcttatcagcaggcggtcacagcaaccggacgtttg
tcttccactgatcccaatttgcagaatattcctattcgcacagctgaggggcgtcgggtg
cgtcaggcctttgttcctgagcaaggttataagattgtcgctatcgactatagccagatt
gaactgcgcattatggcgcatttatcccaggacgcgtcgttgctaaaagcttttgctgaa
ggcttggacattcaccgggcaacagccggggaagtgttcggctgcaaagccgatgaggta
acggatgaccaacgccgtcaggctaaagcggtcaactttggcttaatttacggtatgtct
gcgtttggtcttgcgcgtcagttgggtattgcccgccatgaagctcagcactatatggat
aaatactttgagcgtttccccggtgtgctgcgctacatggaagatacccgtaaacaggca
aaagagcaggggtacgtgaaaaccctgttcggtcgccgcttgcctttgccggatattaaa
gccagcaacggagctcgcaggaaaggtgcggaacgggctgccattaatgcgccgatgcag
ggaaccgcggcggatatcattaaaaaagcaatgctgaaagtcgccgactggattgatagc
aataaatgtcaggatgacgtacgtatgttaatgcaggttcacgatgagttggtctttgag
ataaaagaggccaagctggatgattatattgcacaattaaccgatgtcatggaaaaagcc
gcaagccttgatgtgccgctaattgcagaggcgggtaaaggcaataattgggatgaagcg
cattaa
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