Idiomarina abyssalis: K5X84_01590
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Entry
K5X84_01590 CDS
T07548
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X84_01590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iab03021
]
K5X84_01590 (rpoC)
03400 DNA repair and recombination proteins [BR:
iab03400
]
K5X84_01590 (rpoC)
Enzymes [BR:
iab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X84_01590 (rpoC)
Transcription machinery [BR:
iab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X84_01590 (rpoC)
DNA repair and recombination proteins [BR:
iab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X84_01590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF2267
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QZN91241
LinkDB
All DBs
Position
312711..316946
Genome browser
AA seq
1411 aa
AA seq
DB search
MKDLLKLLKPTNQAEEFDGIRIALSSPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEGGLTSLEQGQILTEDEYLDALEEHGDEFDAKM
GAEAVLDLLRAVDIDGDIQKLREELPETNSETKRKKISKRLKLLEAFQVSGNKPEWMILK
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKMVERETAEVWDVLDEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTKEKINGKGEGMIFKDPNEVEKAYRTG
QVELHSRVKVRITDTTIDEDGNRTTKTELRDTTCGRAILSLIMPEGLPFELINQAMGKKP
IGRMLNQAYRDLGLKDTVIFADQIMYTGFHYAMVSGASVGINDMVIPEAKKEIVSAAEDE
VAEIQEQFESGLVTAGEKYNKVIDIWSTANEKVSKAMMDNLSKEIVKNKDGEDEEQASFN
SVFMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDVVIMEEDCGTYEGLYMKPLIEGGDVVEPLRERVL
GRVLCEPVMKPGSEEELLPRNTLLDEKMCDLLEENSIDEVKVRSVITCDTDFGVCSHCYG
RDLARGHMVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENNIQVKNPGSIKL
HNAKWVVNSDKAHVITSRSTELTLIDEYGRERERYKVPYGAVLKKGEGDSVDGGETVANW
DPHTHPIITEVEGRIKFVDLIDGVTMTRQTDELTGLSSIVVLETGQRTSAGKDMRPMVKL
VDAKGNDVNIAGTDIPAQYFLPGNAIINLEDNSEVRIGDTLARIPQEGSKTRDITGGLPR
VADLFEARKPKEPAILAEKTGTVSFGKETKGKRRLLITPTDGGDQHEEMIPKWRQLNVFE
GEQVTKGEVIADGPEAPHDILRLRGVSAVANYIVNEVQEVYRLQGVKINDKHIETIVRQM
LRKALILRAGDTNLLEGEMVEMSEVLAANAKAEADGKKPATFERQLLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKKDSLRGLKENVIVGRLIPAGTGYSYHKERMQRRLDELNVD
IEPTMTAEQAEQQLADALNAGNSSAGDDSAE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttgctgaagcttttaaagccgacgaatcaggcagaagagtttgatggtatt
cgcatcgctctttcgtctccagatatgatccgtagttggtcatatggtgaggtgaaaaaa
cctgagactattaattaccgtaccttcaaacctgaacgtgatggtttgttctgtgctcgt
atttttggtccggtaaaagactatgagtgcttgtgtggtaaatacaagcgcctgaaacac
cgtggtgttatttgtgaaaagtgtggcgtagaagtcaccttgaccaaagtacgccgtgag
cgcatgggtcacattgagctggcgagcccagttgcccatatctggttccttaaatcatta
ccttcgcgtattggtttaatgctggatatgacgctgcgtgacatcgagcgtgtactttac
ttcgaatcttacgttgtaactgaaggtggcttaacgtctctggagcagggtcaaattctg
acagaagacgaatacttagacgcacttgaagaacacggtgatgaatttgacgctaaaatg
ggtgcagaagctgttctggatctattacgtgctgtggatatcgacggcgatattcagaag
ttgcgcgaagagttacctgagactaattcagaaactaaacgtaagaaaatcagcaaacga
ctgaagttactagaggctttccaggtatcaggcaataagcctgagtggatgatcttaaaa
gtacttccaatcctgccaccagacttgcgtccgttggtacctttggatggtggtcgtttt
gcgacatcggatcttaacgacttatatcgtcgcgttattaaccgtaacaaccgtttgaag
cgtttattagaccttgctgcaccagatattattgtgcgcaacgaaaaacgtatgcttcag
gaagcggttgatgcgttgttagataacggtcgtcgtggtcgtgctattactggttctaac
aagcgtcctctgaaatctttggcagacatgatcaaaggtaaacagggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttattaccgttggtcctaag
ttacgcctgcaccagtgtggtttacctaagaagatggctctggaactgttcaagccgttc
atctacggtaaattagagcgtcgtggtttagcgacaaccattaaagcagcgaagaaaatg
gttgagcgcgaaacggcagaagtttgggacgtacttgatgaagtcatcaaagaacaccca
gtactgcttaaccgtgcaccgacacttcaccgtttgggtatccaggcgtttgaaccggta
ctgattgaaggtaaagccattcagttgcacccattggtctgtgcggcttataacgccgac
tttgacggtgaccaaatggctgtgcacttgccgctgacgctagaagcgcagttagaagca
cgtgcgttgatgatgtctaccaacaacgtactgtcaccagcaagtggcgatccaatcatc
gttccttcgcaggacgttgtacttggtctttattacatgaccaaagaaaaaatcaacggt
aaaggcgaaggcatgattttcaaagatccgaacgaggttgaaaaagcctatcgtacgggt
caagtcgagttacacagtcgcgttaaagtgcgtatcaccgataccaccattgatgaagac
ggtaaccgcacaacgaaaacagaattgcgcgataccacctgtggccgtgccattttgtca
ctgattatgccagaaggtctgccgtttgagctgatcaaccaggctatgggtaaaaagcca
attggtcgtatgctgaaccaggcataccgtgaccttggtttgaaagatacggttattttt
gctgaccaaattatgtataccggtttccattatgcaatggtctcaggtgcatctgtcggt
attaatgacatggttatccctgaagcgaagaaagaaattgtttctgcagcagaagatgaa
gttgctgaaattcaggaacagttcgagtcaggcctggtaactgcgggtgagaaatacaac
aaagttatcgatatttggtcaactgctaacgagaaagtctcgaaagcaatgatggataac
ctgtcgaaagaaatcgttaaaaataaagacggtgaagacgaagagcaagcgtcattcaac
tcggtctttatgatggcggattcaggcgctcgtggtagccccgcacagattcgtcagttg
gctggtatgcgtggtttgatggctaagccagatggctcaatcatcgagacgccaatcgtg
gctaacttccgtgaaggtttgaacgtacttcagtacttcatctctacgcacggtgcgcgt
aaaggtttggccgatacggcactgaagacagcgaactcaggttacctgacgcgtcgtctg
gttgacgtatcgcaagacgttgtgatcatggaagaagactgtggcacatacgaaggtctt
tacatgaaaccgttgattgaaggcggagacgtggtagagccattgcgtgaacgtgtactg
ggtcgagtactttgtgagccggtaatgaagcctggcagcgaagaagagttgcttccaaga
aacacattacttgatgagaaaatgtgtgacttgttagaagagaactctatcgacgaagtt
aaagttcgttcggttatcacctgtgatacagactttggtgtttgttcgcactgttacggt
cgtgacctggctcgtggccacatggttaaccagggtgaagcggttggtgttattgcagca
cagtcaatcggtgagccgggtacacagttaaccatgcgtaccttccacattggtggtgcg
gcatctcgtgcaacagctgaaaacaacattcaggtgaaaaaccctggctctatcaagctg
cacaacgccaagtgggttgtaaacagcgataaagcacacgttattacatcacgttcaacc
gagctaacgctgatcgacgagtatggtcgtgagcgtgaacgttacaaagtaccttacggt
gcggttctgaagaaaggtgaaggcgactcagtagacggcggcgaaactgttgctaactgg
gacccgcacacgcacccaatcattaccgaggtagaaggtcgcattaagtttgttgatttg
attgatggcgtcactatgacacgtcaaacggatgagctgactggcctttcaagcattgtt
gtactggaaactggtcaacgtaccagtgccggtaaagacatgcgtccaatggttaagttg
gttgatgctaaaggcaacgacgtaaacatcgcaggtactgacattccggcgcaatacttc
ttgccgggtaacgctataatcaacctggaagataattccgaggttagaattggtgatacc
ttagcgcgtattccacaggaaggttctaagactcgcgatattacaggtggtctgccacga
gttgctgacttgttcgaagcgcgtaagccaaaagaaccagcaattcttgcagagaaaaca
ggtacagtttccttcggtaaagaaaccaaaggtaaacgccgtttattgatcaccccaaca
gacggtggcgatcagcacgaagagatgattccgaagtggcgtcagctgaacgtgttcgaa
ggtgagcaagtgactaaaggtgaagttatcgccgatggtcctgaagcacctcacgatatt
ctccgcctacgtggcgttagtgctgtggctaactatatcgttaatgaagtgcaggaagtt
tatcgcctgcaaggtgtaaaaattaacgataagcacattgaaactattgttcgtcaaatg
ctgcgtaaagcccttattttacgtgctggcgatactaacttgctggaaggcgagatggtt
gaaatgtcagaagtgttagccgctaacgcaaaagcggaagcggatggtaagaaaccagca
acgtttgaacgtcagttgttgggtattaccaaggcatcgttgtcgactgaatcgtttatt
tcagcggcttcgttccaggaaacaacgcgtgttcttaccgaagcagcagttggcggtaag
aaagacagcttacgtggactgaaagaaaacgtaattgttggtcgtctgattcctgcgggt
acaggttactcatatcacaaagagcgcatgcagcgtcgactggatgaactgaatgttgat
atcgagccaaccatgactgcagagcaggcagagcaacaacttgcggatgccttaaatgct
ggaaatagttctgcaggtgatgattctgcagaataa
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integrated database retrieval system
