Idiomarina abyssalis: K5X84_04105
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Entry
K5X84_04105 CDS
T07548
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
iab
Idiomarina abyssalis
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iab03032
]
K5X84_04105 (topA)
03400 DNA repair and recombination proteins [BR:
iab03400
]
K5X84_04105 (topA)
Enzymes [BR:
iab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K5X84_04105 (topA)
DNA replication proteins [BR:
iab03032
]
Prokaryotic type
DNA Topoisomerases
K5X84_04105 (topA)
DNA repair and recombination proteins [BR:
iab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K5X84_04105 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Toprim_4
Ribosomal_L10
DUF7351
DUF7838
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QZN91703
LinkDB
All DBs
Position
877227..879845
Genome browser
AA seq
872 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTRATETIKSKPAAEVRKMSPDA
KAKYQKERDYKRLIARMGVDPENDWEAHYEVLQGKEKVVKELKQLAKKSEEIILATDLDR
EGEAIAWHLRELIGGDDSRYKRVVFNEITKKAIQEAFEHPAELNTDRVNAQQTRRFLDRV
VGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWDVHADLMTPSEDSL
RMQVMKQAGKNFRPANKEETDAALALLKGSGYEITGREDKPTSSKPSAPFITSTLQQAAS
TRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSAEAVDACRDLIAKDFGKNYLPESPTR
YGAKSNAQEAHEAIRPSDVKVKSESLSSVERDAQRLYELIWRQFVACQMVPARYDSTTLT
ATAGDFELKARGRVMRFAGWTKVMPPASSKKEGDDNLPDVKKGDALKLEQLLPEQHFTKP
PARYGEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFFAEKMGEIVNDRLVEN
FTELMNYNFTAEMEQALDDIAAGKRDWKETLDKFYADFKERLEKAELEPTEGGMRENSLV
LTDIDCPECGRKMGIRTASTGVFLGCSGYNLPPKERCTKTLNLTPGEEAVEVTDEEERET
EALRAKKRCPKCGTAMDSYLIDEKRRLHVCGNNPTCDGQLVEEGTFRIKGYDGPTIECDK
CGSEMQLKNGRFGKYFGCTNSDCKNTRKLLRSGEPAPPKEDPVPLPELPCEESDAYFVLR
DGASGIFLSANTFPKSRETRAVTVKELAQFKDRLPEKFKYLAEAPQEDEDGNDAIVRFSR
KNKEQYVVTEIKKKQTGWKAFFRDGKWQVQDK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcgctcgtcattgtcgagtctccggcaaaagccaaaacgattaataaatat
ttaggtaaggactttgtcgttaagtccagtgttggtcatgtccgtgatctacctacccga
gctactgagacaatcaaaagcaaaccggcagctgaagtccggaagatgtccccggatgca
aaagctaaatatcagaaagaacgggactacaagcggttaattgctcgtatgggagttgac
ccggaaaatgattgggaagctcactacgaagttctgcagggtaaagaaaaagtcgttaaa
gagttaaaacagttagcgaaaaagtctgaggaaattatcctcgcaacggatttggaccgc
gagggagaggcaattgcctggcacctgcgggaacttatcggtggtgacgattcccgctat
aaacgcgtggtgtttaacgaaattaccaaaaaagccattcaggaagcttttgagcacccc
gcagagttgaatacggaccgggtcaatgcgcagcagactcgccgttttcttgaccgtgtg
gtcggctttatggtttctccgttattgtggaagaaaattgcccgtgggttgtcggcaggc
cgtgtgcagtcagttgctgtgcgtctggtggttgaacgcgagcgcgaaataaaagccttt
gttccggaagagtattgggatgttcatgcggatttaatgacgccatcggaagactctctg
cgtatgcaggtaatgaagcaggcgggaaaaaactttcgcccggctaataaagaagaaacc
gatgctgcattggcgttattgaagggttcaggttacgaaattaccggccgtgaagacaag
cccacgtcgagcaaacccagcgcaccgttcattacttcaacacttcagcaggcggccagt
accaggttaggctttggtgtgaagaagacgatgatgatggctcagcgtctttatgaagcc
ggtcacattacttatatgcgtactgactcaaccaatttgagtgctgaagcggttgatgcc
tgccgtgacttaatagcaaaagactttggtaagaactatttgccggaaagcccgactcgc
tatggtgctaaaagcaacgcacaagaagcccacgaggctattcgcccgtcagatgtgaag
gtgaagtcagaatccttatcttcagttgagcgtgatgctcaacgtttgtatgagcttatt
tggcgtcaattcgttgcttgccagatggttccggcacgctatgacagtacgaccttaact
gccactgcgggtgatttcgaattaaaagcgcgcggacgggttatgcgctttgccggttgg
actaaggtgatgcctccggctagcagcaagaaagagggcgatgataatctgccggacgta
aaaaaaggcgatgcattgaaactggaacaactgcttccagagcaacattttaccaagcca
ccggctcgctatggtgaggcgtctttggttaaagagctggaaaaacgcggtattggtcgc
ccgtcgacttacgcgtcgattatttctactattcaggacagaggctatgttcgggtagag
agccgtcgattctttgctgaaaaaatgggtgaaattgtcaatgaccgacttgttgagaac
ttcaccgaactaatgaattacaactttacggcagaaatggaacaggcattggatgatatt
gctgccgggaagcgtgactggaaagaaaccctcgataagttttatgcggactttaaagag
cggctggaaaaagctgaactggaacctactgaaggtggtatgcgtgagaacagtcttgtt
ctgaccgatattgactgtcctgaatgtggtcgaaaaatggggataagaaccgcttcaacc
ggagtttttctgggctgttcaggttacaacctaccgccaaaggaacgctgtactaaaaca
ctgaacctgacgccgggtgaagaagcggttgaggtaactgacgaagaagaacgtgaaacc
gaagcgcttagagcgaaaaagcgctgccctaaatgcgggacagcgatggatagctatctt
attgacgaaaagcgcaggctgcatgtttgcggtaacaatccaacttgcgacggccaattg
gttgaagagggcacgttccggattaaagggtacgacggtccaactatcgagtgtgataaa
tgcggctcggaaatgcagctaaaaaatggacgttttggtaagtactttggttgtaccaac
agtgactgcaaaaatacccgtaagttgttgcgtagcggggaacctgcgccacctaaagaa
gatccggtcccattgccggagttaccctgtgaagagtccgatgcttattttgttttacgg
gacggtgcgtcaggtattttcttgtcagctaatactttccctaagtcacgggagacccgt
gctgttaccgtaaaagaacttgctcagtttaaagaccggttaccggaaaagttcaagtat
ctggcggaggctccgcaggaagacgaggacggtaatgatgctattgttcgcttttcgcgc
aaaaacaaagaacaatacgtggtgaccgaaatcaagaagaaacaaactggctggaaggca
tttttccgagatgggaagtggcaagtacaggacaagtag
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