Idiomarina abyssalis: K5X84_05965
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Entry
K5X84_05965 CDS
T07548
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X84_05965 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iab03019
]
K5X84_05965 (rne)
03009 Ribosome biogenesis [BR:
iab03009
]
K5X84_05965 (rne)
Enzymes [BR:
iab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K5X84_05965 (rne)
Messenger RNA biogenesis [BR:
iab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K5X84_05965 (rne)
Ribosome biogenesis [BR:
iab03009
]
Prokaryotic type
rRNA processing factors
K5X84_05965 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QZN92141
LinkDB
All DBs
Position
complement(1267735..1270623)
Genome browser
AA seq
962 aa
AA seq
DB search
MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAD
RHGFLPLKEIAKTYFPQGYTFQGRPNIKDVVKEGQEVIVQIDKEERGQKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERSALKEALSELNVPKEMGLIVRTAGVGKSKEELEWD
LNVLLNHWEAISKAADERPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSPKVYEQVRTH
IQLIRPDFLQRVKQYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSSRATKGGDIEETALQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPSRHQRDVENRLR
DSLSQDRARIQVARISRFGLMEMSRQRLRPSLGESANNVCPRCNGQGTIRSSDSLALSIL
RLIEEEAIKDNTIQVHSQVPVDVATYLLNEKRQSVNHIEKRHNVKIVIIPNHHLETPHFE
VLRIRDDEVPESASFQLVQKPEQTESTVSITLTQDKAKFEEPALKGLQAPSAAPTPAPKV
EAKKPAQPSLLTRLKVWFSGLFGSDETESQAEANKNKQRTSQNQRNQQRRGRNRRSGNRQ
QRGRNQSTANKDEPSKEAASTAEEKSTDSRDDAGTRNTRNRNDRRRRGRSNKANQTPKTE
AAKNDQASTAAEPEKSKEPKAPQDKPRRQRKPIEKSVRVSSAGDTVKAKEAKQEEQSTEQ
VSTDNSSQKQTAAKEKPAQQSSSGKAENKAISDKVLDPRIQAAAELVQNQAQSKTADDEK
HEEQPTAPPVEKAKQESVEQEEKAKEAVSDNAPQSEDKAETAVEKAEAPTPAEPADAAEP
EASHEAPKAKAVEEEPAKEDTEPKANEEKKGRDRSRRSPRHQRAAGQKRKQQGKAEAVIP
NRSLSGSSFSAMTKATAIERTEDFKALPIAQATSRQDFTKDSRVASISQARSSSYAEMAK
CD
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgctaataaatgccacgcaattagaagaattgcgtgtagcgttggttgacggccaacgc
ctttacgatttagatattgaaagccctggtcacgaacaaaagaaagccaacatctataaa
ggcaaaattactcgtattgagcctagccttgaagcggctttcgttgattatggcgctgac
cgccacggcttccttcctcttaaagaaatcgcaaaaacctacttcccacaaggttatacc
ttccagggccgcccgaatatcaaagacgtggttaaagaaggtcaggaagttattgttcaa
attgataaagaagaacgcggacaaaaaggcgccgccttaaccacgtttatttctttagcg
ggcagttatttggtacttatgccaaataaccctcgcgcaggcggtatttcacgtcgcatt
gaaggcgacgagcgctcagcacttaaagaagctttatcagaactgaatgtgcctaaagaa
atggggctcattgttcgtacagctggcgtagggaaatctaaggaagaattagagtgggat
ttaaacgtcttacttaaccattgggaagctattagtaaagccgccgatgaacgccctgcc
cctttccttattcaccaggaaagtaatgttattttccgtgctctgcgggactacttacgc
cgtgacatcggcgaagtgcttattgatagcccgaaagtatacgagcaggtacgcacacac
atacaattaattcgtccggactttctgcaacgagtaaaacaatatgaaggtgacgttccg
ctattcagtcactatcaaattgaaagccaaattgaatcagcttttcaacgcgaagttcgc
cttccgtccggtggttcaattgttatcgatccgacagaagccttaacctctatcgacatt
aactcctctcgcgccactaaaggcggagatatcgaagagacggcactgcagactaacctt
gaagcagcagaagaaattgcgcgtcagttgcgccttcgtgatgtgggtggcttagttgtt
atcgattttattgatatgacgccttctcgccaccaacgcgatgtggaaaaccgcctgcgc
gatagtctgtctcaagacagagctcgcattcaggttgcccgtatttcacggtttggcttg
atggaaatgtcgcgccaacgcctgcgcccatcactgggcgagtctgcaaacaatgtttgt
cctcgttgtaacggtcagggaaccatacgttcaagtgactctttagcactttcaatctta
cgtttgattgaagaagaagcgattaaagacaataccattcaggttcattcacaggtgcca
gttgacgtagccacgtatttgttaaacgaaaagcgtcaatcggttaaccatattgaaaaa
cgccataacgttaaaatcgtcattattccaaaccatcacctggaaacaccgcattttgaa
gttttacgaattcgtgatgacgaagttcctgaatcagcaagttttcagttggtgcaaaaa
ccagagcaaacagagtctacagtttctattaccctgacccaggataaagctaagtttgag
gagccagcattaaaaggccttcaggctccgagcgcagcgcctaccccagcgccaaaagtt
gaagctaaaaaaccagctcaaccatcattactgactcgtttgaaagtttggttctcaggt
ttatttggttccgatgaaacagaaagccaggcggaagcaaataaaaacaaacaaagaact
tcgcaaaatcaacggaatcagcaacgtcgaggccgtaaccgtcgttctggtaaccgtcag
caacggggtcgcaatcagtctacagctaacaaggatgagcctagcaaagaagcggcttct
acagctgaagagaagtcgaccgattcacgtgatgatgcaggcactcgcaacacacgtaac
cggaatgaccgcagacgtcgtggacgcagtaataaagcaaaccagacaccaaaaactgaa
gcggctaagaacgatcaagcgagtactgcggctgagccagaaaaatccaaagagccaaaa
gctcctcaggataagcctcgccgtcagcgtaaacctattgaaaagtcggttagagtttca
tctgccggcgatacagtaaaagcaaaagaggctaagcaagaggagcaaagtactgagcag
gtcagtaccgacaatagctctcaaaagcaaacagcggcaaaagaaaaaccggcacagcaa
agtagctccggtaaagctgaaaacaaagccatttctgataaggtgcttgatccacgcatt
caggcagctgctgaactcgtgcaaaatcaggctcagtctaaaacagctgatgacgaaaag
catgaagagcagccaacagctcctccggtagaaaaagctaagcaggaaagcgtggagcaa
gaagaaaaggcaaaagaagccgtttccgataatgcgcctcagtctgaagataaagctgaa
acggctgttgagaaagctgaagcacctacgccagcagagcctgctgatgcagctgaacct
gaagcgtctcatgaagcgccaaaggccaaggccgtagaagaagagccagcaaaagaagac
actgagcccaaagcaaacgaagaaaagaaaggtcgggatcgctctcgccgttctcctcgc
caccagcgtgctgcgggtcaaaaacgcaagcaacaaggtaaggccgaggccgttatacca
aaccgttctttgagcggctcatccttttcggccatgactaaagctacggcaatagagcgc
actgaagatttcaaagcgctacctattgcacaagcgaccagtcgccaggattttactaag
gacagtcgtgtagcgagtatttctcaggctcgctccagttcttatgctgaaatggcgaaa
tgtgactaa
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