Idiomarina abyssalis: K5X84_08605
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Entry
K5X84_08605 CDS
T07548
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
iab
Idiomarina abyssalis
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iab03016
]
K5X84_08605 (rnd)
Enzymes [BR:
iab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K5X84_08605 (rnd)
Transfer RNA biogenesis [BR:
iab03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K5X84_08605 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DUF7924
WHD_GTF3C1
NERD_plant
Motif
Other DBs
NCBI-ProteinID:
QZN90223
LinkDB
All DBs
Position
complement(1790320..1791489)
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AA seq
389 aa
AA seq
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MTLPLNLPESVRQYRLVTETQELERLCQQAREAGWFAIDSEFVRERTYYAQLGLLQIYAN
GTTAVVDPLADIDLEPLWELIADDSVETVLHAGGEDIELFFQQSNGRQPNRIFDSQIAAG
FCGLGDSMGYARLVDALFDGVELDKSLSRTNWLKRPLSEEQLDYAAADASYLAVMYPYLK
ALCEEKGCLDIVYEESQIQVRKRTQSWPDDLLYLAVGNAWQLNARQLGALKILTPWRLHK
ARERDIPLGFIAKDGVLLELARRMPKSDEELSRIPDLAPMSRKYSGRDIIRCIQQAEQVS
ESELPKTLERLDDMEGYKPTFKAIKKVVSELADKLQVPASLVASRKQINDVINFHWQYST
QQQQRLPQPDLMMGWRKQAIGAELQAIIG
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgactctgccgttgaacctacccgagtcggtacgccagtaccggctcgttactgaaact
caggaattagaacgtctttgtcagcaagctagagaagctggctggtttgccattgactct
gaatttgtacgcgagcgcacttactatgctcagttggggcttttacaaatttatgccaat
ggcacaactgctgttgtggatcctctcgccgatatcgacttagagccactgtgggagcta
attgcagatgactccgttgaaacagtcctgcatgccggcggtgaagatattgagctgttt
ttccagcaaagtaatggccgtcagcctaaccgtattttcgacagtcaaatagccgcaggt
ttttgtgggctcggtgattctatgggctacgcccgtttggtcgatgccttatttgatggc
gttgagttagataaaagcttgtcacgcaccaactggctgaagcgcccgttaagcgaagag
cagttagattatgctgcggctgacgccagctacctggcggtaatgtacccttatttgaag
gctttgtgtgaggaaaagggctgtctggatattgtgtacgaggagtcgcaaattcaggtt
cgaaaacgcacacaaagctggccggatgatttgttgtatttagctgtaggtaatgcctgg
cagttaaatgcacgccagctgggcgcacttaaaattctgacgccatggcgtttgcataaa
gcgcgcgagcgggacattccactgggttttatagccaaagacggcgtgctacttgaactg
gctcgcagaatgcccaaaagcgacgaggagctaagccgaattccggacttagcgcctatg
tcccggaagtattctgggcgggatattattcgctgcattcagcaagctgagcaggtgtct
gagtccgaactgccaaaaacgcttgaacgcttagacgacatggaaggctataagccaacc
tttaaagccataaaaaaagtggtgtctgaacttgctgacaaactgcaggtgccggcatcc
ttagtagcctcccgtaagcaaattaacgacgttattaactttcactggcagtattcaacg
cagcaacaacagcgtttgccgcaacccgacttaatgatgggttggcgcaagcaagcaatt
ggggcagaattacaggctataattggttaa
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