Idiomarina abyssalis: K5X84_09215
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Entry
K5X84_09215 CDS
T07548
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X84_09215 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iab03019
]
K5X84_09215 (rnr)
03016 Transfer RNA biogenesis [BR:
iab03016
]
K5X84_09215 (rnr)
Enzymes [BR:
iab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K5X84_09215 (rnr)
Messenger RNA biogenesis [BR:
iab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K5X84_09215 (rnr)
Transfer RNA biogenesis [BR:
iab03016
]
Prokaryotic type
tRNA degradation factors
K5X84_09215 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
OB_Dis3
YolD
DUF4298
CSD
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QZN90336
LinkDB
All DBs
Position
complement(1894654..1896963)
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AA seq
769 aa
AA seq
DB search
MSDNQQNNNTPDYEVEIPSREQLLELVTSNNKPVHFDEFIRHFNLDDERQAVGLKRRLRA
MERDGQLIYSKANAYGLPERMDLIKGRIIGHKDGFGFCQTEDGGKDLFIPHHQMYSVLHG
DRVLVQPSGKDSRGRTEGRIVRVTEPRDSNIVGRYFIEHGLGIVVPDDGRISQDILIPDA
DKSGARHGQLVVVEITRRPSRRTSPIGRVTEVLGEHMAPGMEIQVAIREHDIPTEWPSEV
DEELKKYSEEVPAEAYEGRKDLRELPLITIDGEDSRDFDDAVCCVPEEKGWRLWVAIADV
SYYVRPDTVLDKAATDRGNSVYFPSNVIPMLPEKLSNGLCSLNPDVDRLCMVAEMELGPR
GKLKSTQFYPAVMKSHARLTYNKVKKLLDGDEELQQQYQHVMDNVQELERLYNALSAARK
RRSAIEFDTQETRFIFNAERKIESIEPVKRHVAHKIIEECMIMANVASAQLIESDKEIGA
LFRVHETPADERLNNFRSFLGELGLNLEGGDEPSPRDYATLLEQVKDRQDHELIETMLLR
SMQQAVYQPENKGHFGLALKSYAHFTSPIRRYPDLILHRAIKAILRKNEGEGKGLVGAWA
YSEKQLDELGVHTSMTERRADDATRQVDEWLKCEFMLDHIGMEFEGVISSVTNFGLFVRL
SDYQIDGLIHISNLDNDYYHFDQQKGMLVGENSHSVFRLGDNVKVKVKDVNLDDRKIDLT
LLEATSPGGKKRSMPAKGSGKGKRKGQPRGKGGQRKNTNRGGGKGRSKS
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatcagcagaacaacaatacgccagactacgaagtcgaaattccaagccgc
gaacagttattggaacttgttacttccaataataaacctgttcattttgacgagtttatt
cgccatttcaacctggatgacgaacgtcaggctgttggcttaaaacgtcggttgcgggca
atggagcgcgacgggcagcttatttacagtaaagcaaatgcttatggtctgcctgagcgt
atggacttgattaaaggtcgtatcattggtcataaagacggttttggtttctgccagact
gaagacggcggaaaagatctctttattccgcatcaccaaatgtattctgtattacacggc
gaccgagtactcgttcagcctagtggtaaagacagtcggggtcgcaccgaagggcgtatt
gtacgtgttacggagccaagagacagtaacattgttggccgctacttcattgaacacggt
ttaggtattgtagtgccggacgatggtcgcattagtcaggatatcctcattccggatgcg
gataaaagtggggctcgtcacggtcagttagttgttgtagagataactcgtcggccaagt
cgtcgaaccagccccataggccgggtgaccgaggttctgggtgaacatatggcgcctggc
atggaaattcaggtggctattcgcgagcacgatattcccactgaatggccatcagaagtt
gatgaagaattaaaaaaatacagtgaagaggttccggcagaagcttatgaaggacgtaaa
gacctacgtgaacttccgcttattactattgatggtgaagactctcgcgactttgatgac
gcggtttgctgtgtgcctgaagagaaaggttggcgtttatgggtcgctatagccgatgtt
tcctattatgtacggcccgatacggtgcttgataaagccgcgactgatagagggaattcg
gtttatttccccagtaacgttattcctatgttaccggagaagctttcaaacggcttatgt
tcattgaaccccgatgttgaccgtctgtgtatggttgcagagatggaactggggcctcgt
gggaaactgaaatcgactcaattctacccggcagtaatgaaaagtcatgctcgtctgact
tacaacaaagttaagaagttgcttgatggcgacgaagagctgcaacaacagtatcagcat
gtgatggacaacgttcaggagcttgaacgtctttacaatgcgttaagtgctgcccgcaaa
cgccgttcggctatcgaattcgatacgcaggaaacccgcttcatttttaacgctgagcgt
aaaattgaaagtatcgagcctgttaaacgtcatgttgctcataaaattattgaagagtgc
atgatcatggctaacgtggcatccgcccagcttattgagtctgacaaagaaattggcgcg
ttattccgtgtgcatgagactccggcggatgaacgtctgaacaacttccgcagttttctt
ggtgaactcggcctgaatctcgaaggtggtgatgagccctctccgagggactacgcgaca
ctgcttgaacaagttaaagatcgtcaggatcacgaacttattgagactatgttgctgcgt
tcaatgcaacaggccgtttatcagcctgagaataaaggccatttcggtctggcattgaaa
tcttatgcacactttacttcacctattcgtcgttatcccgatctgattttgcatcgtgcg
ataaaagctattctgcgcaaaaatgaaggcgaaggtaaagggcttgtcggagcctgggct
tattcggaaaaacagctggatgaactgggcgtgcatacctcaatgacagaacgtcgggca
gatgatgccactcgtcaggtagatgagtggttaaaatgcgagttcatgctcgaccatatt
ggtatggagtttgaaggtgttatttcatctgttactaactttggtttatttgttcgtctt
agtgattaccaaattgacgggcttattcatattagtaacctcgacaatgactattaccat
tttgatcagcaaaaagggatgttagttggcgagaacagccacagcgtattccgtctgggt
gataacgttaaagtgaaagttaaagacgtaaacctcgatgaccggaaaattgatttaacc
ttactggaagcgacgagcccgggtggcaaaaagcgcagtatgccggcaaaaggttctgga
aagggtaaacgtaagggtcaacccagaggcaagggtggtcaacggaaaaacacaaaccgc
ggtggcggtaaaggacgtagtaagtcatga
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