Idiomarina abyssalis: K5X84_09465
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Entry
K5X84_09465 CDS
T07548
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X84_09465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iab03019
]
K5X84_09465
03009 Ribosome biogenesis [BR:
iab03009
]
K5X84_09465
Enzymes [BR:
iab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5X84_09465
Messenger RNA biogenesis [BR:
iab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5X84_09465
Ribosome biogenesis [BR:
iab03009
]
Prokaryotic type
rRNA helicases
K5X84_09465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
MatB
SecA_DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QZN90383
LinkDB
All DBs
Position
complement(1952708..1954486)
Genome browser
AA seq
592 aa
AA seq
DB search
MSNTQTGVSFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTA
AFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQ
VKALKQGTAIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVP
NTAQRALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTR
LLEVTPYQRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEI
LVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLR
HYERLTNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGQWLEQS
ELSAEEIALALLAQQNEQRPLFLKEDRPVREMRSERSGRNERSDRGDKRKPRAERATSRA
ADVDFETYKIQVGREHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDI
MHVLKKARVRQQPMGLELSDEQVKRAPRPPRDRDARGGPKRNSGKGAARRFN
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatacccaaacgggcgtgtcgtttaacgacatggccttacctagtgctgtgctt
gaacaattaaacgcaatgcagtttttaacccctactcctatacagctgcaggctattcct
gcgttgcttgaaggtcaggatgtattgggtgaagcccagacaggtaccggtaaaactgcc
gcttttggtctaccagcgttggcaaaaatagacgcatcagttaagcaaactcaggtatta
gtagtaacgccaactcgtgagctggctattcaggttgctgaagcgcttgaaggcttcgct
gcgaaaatgcgtggtgttggtgtcgcaacggtttacggtggtgcgccatttggacctcag
gttaaagccctgaagcagggcaccgccattgttgttggtactccgggtcgtcttatcgac
ttattaaataaaaacgttctgcaactggacggtttgaaagttggtgttctggatgaagct
gatgaaatgcttaacatgggtttcattgaagacatcgaaacgatattaaaagctgtaccg
aatacggcgcaacgcgcattattctcagcgactatgccaaatgcaattcgtaaactggca
aaaactttcctgaaagatccgctgaacattcagattgaagctattgctcgcgagaaggcg
accattaagcagaaagcctggaaagttcagggcatgactaaaatgactgctctgactcgg
ttgttagaagtgactccgtatcagcgcgcattgatattcgtacgtacccgtcaggataca
atggacgtggctgaattattgcaacgcaacggctttaaagcggcgccattaagcggtgat
ttgaaccaggctcagcgtgagcagactgtcagtcagttacgtagtggacacatcgaaatt
ctggtaggaaccgacgttgttgctcgtggcttagatgttcctgaaattacgcacgtgatt
aactatgacttaccgagcgacactgaatcttatgttcaccgtattggacgtactgggcgt
gcgggccgtacaggtgaggcgattttgttcttccgtgcaaaagagcgtcatttgttgcgt
cactatgagcgcttaaccaacgcaccggttgagttctttgaagtaccaaacgctaacgaa
ctgagcaaatatcgtcagcaacagttactggaaaagctacaagcgtctttggctcctgaa
actgcaagtgctgataagcctaaacttgaaaagctgttaggacagtggctggaacagtct
gaattgagtgctgaagaaattgcattagcgcttctggctcaacagaacgagcagcgccca
ttgttcctgaaagaggaccgccctgtacgcgaaatgcgcagtgaacgttcaggtcgcaat
gagcgcagtgatcgtggcgacaagcgcaaacctcgtgcagagcgtgcgacaagtcgtgcc
gccgatgtggattttgaaacttacaaaattcaggttggccgcgaacatggtgctcgtcct
ggtgacatcgttggggctattgctaacgaagcttcaatggacagcaagtacattggtcaa
attcagttgtttgataatcattctttagtgcagctacctaagggtatgccaaaagatatt
atgcatgtactgaaaaaagcccgtgtgcgtcagcagccaatgggtcttgagttaagcgat
gagcaagtaaaacgtgcgccacgcccaccgcgtgaccgtgatgctcgcggcggacctaag
cgcaactccggtaagggtgctgcgcgccgctttaattaa
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