Idiomarina abyssalis: K5X84_10025
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Entry
K5X84_10025 CDS
T07548
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
iab
Idiomarina abyssalis
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
iab03009
]
K5X84_10025 (srmB)
Enzymes [BR:
iab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5X84_10025 (srmB)
Ribosome biogenesis [BR:
iab03009
]
Prokaryotic type
rRNA helicases
K5X84_10025 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_30
Cas3-like_C_2
UvrD-helicase
AAA_22
Helicase_RecD
CMS1
PhoH
Motif
Other DBs
NCBI-ProteinID:
QZN90486
LinkDB
All DBs
Position
2069998..2071242
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AA seq
414 aa
AA seq
DB search
MTPDWEEFDLDDRLIAVLRDAQLNKPAKVQQQSIPAALDGRDLLVSAPTGTGKTLAFLLP
ALQHLLDFPRQQPGPARILVLAPTRELAEQIHQQAQQFESKTGLSSVVVTGGINYGSQLS
LLEKTHDILVATPGRLMDLLEAEQYNLEGIEWLIIDEADRMLDMGFAATVKEMALQARHR
QQSLLLSATLNSSGVIKFSRELLTEPEYIDVQPPKRERGKIVQWVHLADTDEHKRQLLMS
TLKEHQGRQFVFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTTD
ITLVATDIAARGLDVDDITVVVNYDLPKQADVYLHRIGRTARGGQKGIAISLVEAHDALL
LGRIERYLDAKLDRRTIQGLKPQYKFPSTEKARSKKKDKKKKDAKKKDTKKKSR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaccccagactgggaagagtttgatcttgatgaccgcttaattgcggtccttcgggac
gcacaactgaacaaaccggcaaaagtacagcaacagagcattcctgcagccctcgatggc
agagacttgcttgttagtgccccgacaggaaccggcaaaaccttagccttcctgttaccg
gctctgcaacatttgctggacttcccacgtcaacagccaggtcctgcccgcattctggtt
cttgctccaactcgcgaactggctgagcagattcatcagcaggcccagcagtttgaaagc
aagacggggctgtcgtccgttgtggtaaccggcggtattaattacggctcgcaactgtct
ctgctggaaaaaacgcacgatattctggtcgccacacccggtcgtttaatggatttgctc
gaagccgagcagtacaacctggaaggcatagagtggctgattattgatgaagccgaccgc
atgttggacatgggctttgcagcaacagttaaagaaatggcactgcaggcacgccaccgc
caacagtcattgctgctgtctgcaacattgaatagctctggtgttattaagttttcgcgc
gagctgctgacggaacctgaatacattgacgttcagccaccaaagcgtgaacgcggtaaa
attgttcagtgggtacacttagcggataccgatgagcataaacgccagcttttaatgagc
acactgaaagaacaccaggggcggcagtttgttttcgtcagaacacgtgagcgagtagag
ctcatcgccaactttttacgcagtcagtttggtaccgggcgcaaaattgtcaccttgcgg
ggtgacatgccgcaaagtgatcgccagcgcatcatgaacgagttaaaacagaccacagat
atcacgctagtagctaccgatatagccgcaaggggcctggacgttgatgatattaccgtg
gttgttaactacgacttaccaaagcaagcggacgtttatctgcacagaattggccgcacc
gctcgcggtgggcaaaaaggcatagccatttcattagtggaagcgcacgatgctttatta
ctggggcgtattgaacgttacttagacgctaagctcgacagaagaaccattcagggcttg
aagcctcagtataagttcccgtcgacagaaaaggctcgttctaagaagaaagataaaaag
aaaaaggatgcaaagaaaaaagatacaaagaaaaagtcgcgttaa
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