Idiomarina abyssalis: K5X84_10390
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Entry
K5X84_10390 CDS
T07548
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
iab
Idiomarina abyssalis
Pathway
iab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K5X84_10390 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iab03021
]
K5X84_10390 (rpoD)
Transcription machinery [BR:
iab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K5X84_10390 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QZN90555
LinkDB
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Position
complement(2153977..2155806)
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AA seq
609 aa
AA seq
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MQQNRQSQLKVLIAKGKEQGFLTFAEVNDHLPQEIVDSDQVEDIIRMINDMGIRVFESAP
DADDLMMAESAADEDAAEEAAQALASVDGEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEEGINQVQCSVAEYPEAINFLLEQWDSYEAEELRLTDIISGFIDPDEVDEAPVAATH
VGSELPTEELEDEDDDDDDDEEETDTGIDPEFARSKFNALREQYEATRQAIAKHGRDGAD
ARVEIDKLSDLFKQFRLVPKQFDRLVKDMRAMMQRVRVQERIIMKISVEQGQMPKRSFMK
AFASHENNLAWVDKEIDSGAAYADTLKEVRGEIERCVNKLVDVEKETGLTIGKVKEINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELA
ERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLDLPIDSATSESLRNSV
RDVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EQLKSFLDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagaatcggcaatcgcaacttaaggtccttattgcgaaaggcaaagagcaaggg
tttttgacatttgctgaagtcaacgaccatttaccgcaagaaattgttgattccgatcag
gttgaagacattattcgcatgatcaacgacatggggatccgcgtttttgaaagcgcgccc
gatgccgatgatctgatgatggcagaaagcgctgctgatgaagacgctgctgaagaggcc
gctcaggcgttagcttctgttgacggtgaaattggtcgtacgaccgaccctgtgcgtatg
tacatgcgtgaaatgggtacggttgagctactgacccgcgaaggcgaaattgacattgcc
aagcgcattgaagaaggcattaaccaggttcagtgctccgttgctgagtatcctgaagcc
attaacttcctgcttgagcaatgggactcctacgaagccgaagaactgcgcttaaccgac
attatttccggattcattgaccctgacgaagtagacgaagctcctgtggctgctactcac
gttggttctgaacttccaaccgaagagctggaagatgaagacgatgatgatgacgatgac
gaagaagaaacggataccggtattgatccggaatttgctcgcagcaagttcaatgcactt
cgcgaacaatacgaagcaactcgtcaggctattgcaaagcatggtcgtgatggtgccgat
gcccgcgttgaaattgacaagctcagcgacttattcaaacagttccgcttagttcctaaa
cagtttgaccgcttggttaaagacatgcgtgccatgatgcagcgcgtgcgtgttcaggaa
cgcataattatgaagataagcgttgaacaggggcagatgccgaaacgcagcttcatgaaa
gcctttgccagccacgagaataacctggcctgggttgataaagagatagattccggtgca
gcctacgccgatacattgaaagaagttcgcggtgaaatagaacgctgcgttaacaagctg
gttgatgtagaaaaggaaacaggcttaaccattggtaaagttaaagaaattaaccgtcgt
atgtccattggcgaagcgaaagcacgccgtgcgaaaaaagagatggttgaagcgaaccta
cgtttagttatctctattgctaagaagtacaccaaccgcgggttgcagttcctggactta
attcaggaaggtaacattggcctgatgaaagctgtggataaattcgaatatcgccgtggt
tataagttctcaacttatgctacctggtggatccgtcaggctattactcgctccattgcg
gaccaggctcgtactattcgtattccggtccacatgatagagaccattaataagcttaac
cgcatttcacgccaaatgttgcaggaaatggggcgtgagcctctaccggaagagctggcc
gagcgcatgatgatgccggaagacaaaatccgtaaggtattaaaaattgcgaaagagcca
atttcgatggaaaccccaattggtgacgacgaagattcgcacctgggtgactttatcgaa
gacaatacgctggaccttcctattgattcagcaacgtcagaaagcctgcgtaactcggtt
cgtgacgtgcttggcggcttaacagctcgtgaagcaaaagtattgcgtatgcgctttggt
attgatatgaatacagaccatactttagaagaagttggtaagcagtttgatgtaactcgt
gaacgaattcgtcaaattgaagccaaagcattaagaaagcttcgccatccaagtcgctct
gagcagcttaaatcgttcttggatgagtaa
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