Idiomarina abyssalis: K5X84_10500
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Entry
K5X84_10500 CDS
T07548
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
iab
Idiomarina abyssalis
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iab03021
]
K5X84_10500 (rapA)
Transcription machinery [BR:
iab03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K5X84_10500 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
SNF2-rel_dom
Tudor_1_RapA
Helicase_C
ResIII
Tudor_RapA
DEAD
Cas3-like_C_2
AAA_22
RNAse_A_bac
Smoothelin
Motif
Other DBs
NCBI-ProteinID:
QZN90575
LinkDB
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Position
2177848..2180508
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AA seq
886 aa
AA seq
DB search
MSEFRVGQRYLSETETELGLGMITQAEGRHLTVMFPATGEVRLYSAQDAPLARYQLQVQQ
QGKHADGWSFTIQELTESQGIVTYHGLRDDNQESVVVPETQLSHQVDSNPALTRLLAGQA
DRLDMYQLRCEAGEHLAHHQASEVAGLLGVRTHLLPHQLYIAKTVADRYHPRVLLADEVG
LGKTIEAGMIIKRRLTTGRSQRALIVVPESLMHQWLVELRRRFALNFTLFDDERCEQAEA
DSENPFLTEQHIIISSRFMHESRWNEALLDAEFDLLIIDEAHHLQPNAPEFSAVKDLCEA
VPSLLLLTATPEQEGAEGHFQRLQLLDPDRFSDFASFQQEQAHYKELAEQAESVTDPAEL
DDLLDKHGTGRVMFRNRRADIGGFPERHFHPVELDECEPDEDMPWWMEDPRIDWLLEHIK
QNRSEKALLICKTAEQVLDLSEALRVLAGVHAATFHEGMTLTERDRSAAFFASEEDGSPI
LLCSEIGSEGRNFQFVHQLILFDLPANPDLLEQRIGRLDRIGQQQDIDIYLPYCRGSAEA
ILLPWYEQGMNAFTQCNAIGRKLYDAFGAEIEQAITEQQPLSSELLEQTKELHKTWLEHN
REGQDKLQALNACRPETAEKIIEQIHSDSDTDTLADFMIAFFDRFGVNNEVLDEERWFIR
PGEHMRVGSLPGLPDDGITITFDRVTALNFEDTDFLSWDHPMVQAALELLTADDFGSTCV
AELKNPAIPAGSWFLELDFASIVPAPKAAALQEFCPLQSLRLLFNGQGQELSAKVSRELL
DQQSNFIDKKTARQVLRQLRDAAQKLIQSGQQQARKWQQEQLEQVRQEATAALQHERQRL
LDLQKKNPSVRSSEIEAINWREEQITAALESPQLSLQAVRILVNNH
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagtttagagttggacaacgttacctcagtgaaactgaaaccgaattagggctg
ggtatgataactcaggccgaaggtcgtcacttaaccgtgatgttccctgccaccggtgaa
gtgcgactgtactctgctcaagatgcgcctctggctcgatatcagttgcaagttcaacag
caaggtaagcacgccgacggctggagcttcactattcaggagctgactgagtcacagggt
attgtgacttaccacggactgcgtgatgacaaccaggagtcagttgttgttcctgaaact
caactctcgcatcaagttgacagtaatccggcattaactcgtttgcttgctggtcaggcc
gaccgactcgatatgtatcaattgcgctgtgaggctggtgaacatttggcgcatcaccag
gcaagcgaggtggccggcttattaggcgttcgtacccatttgctgccgcatcagctgtat
attgctaagacggtcgctgatcgctatcacccacgcgtgcttttggccgacgaagtgggc
ttaggaaaaaccattgaagccggcatgatcattaagcgtcgactaaccaccggacgctct
caacgcgcactcattgttgtgcctgagtctcttatgcaccaatggttagtggagctacgt
cgccgctttgcactgaactttaccctgtttgatgacgaacgttgtgagcaagcggaagcc
gacagtgaaaatccttttctgaccgaacaacacattattatcagtagtcggtttatgcat
gagtcacgctggaatgaggccttactcgatgcggaatttgatctgctgattattgatgaa
gcccaccatctgcaaccgaatgctcctgaattcagcgccgtaaaagacctttgcgaagct
gtgcccagtttgctgctgctaacggcaacaccagaacaagaaggtgctgagggacatttc
cagcgactgcagttactggatccggacaggttctccgactttgccagtttccagcaagaa
caggcgcactacaaagagttagcggaacaggcggagtctgtgactgacccggcagagctt
gatgacttgctcgataaacacggcacagggcgcgttatgtttcgtaaccgtcgggccgat
atcggcggattccctgaacgccattttcatccggtagaactggacgagtgcgaacccgat
gaagacatgccctggtggatggaagatccgcgtattgactggttattggagcacattaag
caaaaccgctcagaaaaagcgctgctaatctgtaaaactgcggagcaagtgctggatttg
tctgaagctctgcgcgtactcgcaggtgtgcacgcggccacctttcatgaaggaatgacg
ctgaccgaacgagaccgttctgctgccttttttgcgagcgaagaagatggcagccctatc
ctactgtgctcagaaattggcagtgaaggccgcaattttcagttcgtgcatcaactgatc
ttattcgacttaccagccaaccccgacttgctggaacagcgtattggtcgtttagaccgt
attggccagcagcaggacattgatatttacctgccttattgtagaggctctgccgaagct
atattgctgccatggtacgagcagggaatgaatgccttcactcagtgtaatgcgataggc
cgtaaactgtacgacgctttcggcgctgaaattgagcaggctattactgaacagcagcct
ttaagttctgaactattagagcagacaaaagagctgcacaaaacctggctggagcacaac
agggaaggtcaggacaagctgcaggcactcaatgcttgtcgcccggaaaccgcagaaaaa
atcatagagcaaattcatagcgacagcgataccgatacgctcgccgatttcatgattgcc
ttctttgaccgttttggtgttaataacgaagttctggatgaagaacgctggtttattcgc
ccgggagaacacatgcgtgttggcagtctgcctggtttgccagacgacggtattaccata
acctttgacagggttaccgcgctgaactttgaagataccgactttctgagctgggatcac
ccgatggtacaagcagcgctcgagttgctgactgctgatgactttggcagcacttgtgtg
gccgagttaaaaaacccggcaattccggcgggcagctggttccttgaattagactttgcc
agcatagttcctgcgcctaaagccgcggccctacaggagttttgcccactgcaaagcctg
cggcttctgtttaatggtcaggggcaggagctctctgccaaagtatcgcgcgagctactg
gatcagcagtctaacttcattgataagaaaaccgcccgtcaggtattgcgccagctaaga
gatgcagcgcaaaagcttatccagtcaggccaacaacaagcacgcaaatggcagcaagag
caactggagcaggtaagacaagaggctacagcggcactgcaacatgaacgccaacgactg
ctcgacttgcagaagaaaaacccatcggtacgcagcagtgaaatagaagctataaactgg
cgcgaagagcagattacagcggcactggaaagtccgcagttgtcgctacaggctgttcgc
attttggtgaacaaccattaa
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