Idiomarina abyssalis: K5X84_11225
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Entry
K5X84_11225 CDS
T07548
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X84_11225 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iab03019
]
K5X84_11225 (rhlB)
Enzymes [BR:
iab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5X84_11225 (rhlB)
Messenger RNA biogenesis [BR:
iab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5X84_11225 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QZN90705
LinkDB
All DBs
Position
2333645..2334925
Genome browser
AA seq
426 aa
AA seq
DB search
MTKTHLTETRFADLALHPKIQQAISSAGFEYCTPIQALSLPVALSERDVAGQAQTGTGKT
LAFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLKMGVIYGG
EGYEGQKEQLASQPDILVGTTGRLIDFYKQGLFSLNDIEVVVLDEADRMFDLGFIDDIRY
LLQKMPEPAKRLNLLFSATLSYRVQELAYEHMNAPTKLEVEPSQKTATRVTEELFYPSKP
EKFPLLLTLIEEDWPDKAIVFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILED
FAEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLAC
EEYVYNLPAIEDYIGHTIPVTKYDPDALLSDLRRPRPVQRRRRHNSGGGSKGKPRGRRSG
PPRNAS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaacacatcttacagaaactcgctttgctgatttggcgcttcaccccaaaatc
cagcaagcaatatccagtgccggattcgagtattgtactccaattcaggcgttaagtctg
cctgttgctctctctgagcgtgatgttgccggccaagcccagacaggtacaggaaagacc
ttggcatttctgctggctactttcaaccgcttaatgcagaacgaatcgtccgaaaaaaca
gaatcggggccgcgcgcactcattatggctcctactcgcgaactggctattcagatagcg
cacgacgccgatgctcttattgagcactgtggattaaaaatgggcgttatctatggcggc
gaaggttacgaaggccaaaaagagcagctagcttcacaacccgacatactggttggtacc
acaggccgacttattgatttttataagcaaggtctgttcagtctcaatgacattgaggtt
gtggttctggatgaagctgatcgcatgtttgaccttggctttatcgatgacattcgttat
ttgttgcagaaaatgccggaaccggccaagcgcttaaacctgctgttttcagcaacattg
tcttatcgcgtgcaagaactcgcctacgagcacatgaacgcaccaacgaagcttgaggtc
gaaccgtcacagaaaaccgcgacacgggtaaccgaagagttgttctacccctcgaagccg
gaaaaattcccgttattactcacgcttattgaagaagactggccggataaagctatcgtt
ttcgcaaataccaagcatggttgtgagaaagtacacggctggctggttgcgaatgaacac
cgcgcaggtctgctcaccggcgatgtcccgcagaaaaaacgcttacgcattctggaagac
tttgccgaaggtaaactcgactttttagtcgcaaccgatgttgcggcacgtggtctgcat
attcccgaagtgacgcatgtgtataacttcgacctgcctgacgactgcgaagactatgta
caccgtataggccgtaccggacgtgccggtgccagtggtgcagctatcagcctggcgtgc
gaagagtacgtctacaacttaccggctattgaagactatattggtcatacaattccggta
accaaatacgaccctgacgctttactgtcagacttaagacgccctcgtcctgtacagcgt
cgccgtcgccacaactctggcggcggaagcaaaggtaagcctcgtggtcgtcgctcagga
ccaccgcgcaacgcgtcgtaa
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