Idiomarina abyssalis: K5X84_12035
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Entry
K5X84_12035 CDS
T07548
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K5X84_12035 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iab03400
]
K5X84_12035 (recB)
Enzymes [BR:
iab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K5X84_12035 (recB)
DNA repair and recombination proteins [BR:
iab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K5X84_12035 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_22
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QZN90856
LinkDB
All DBs
Position
complement(2502831..2506544)
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AA seq
1237 aa
AA seq
DB search
MSQLPSHTSGHTLENPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGMEETA
FDRELVPKNILVMTFTKAATEELSDRIRARLAEAAAYFRDPEAVEGDPFLACLRDDCAAQ
GQNLMHLARLLDLASQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEELRLQA
AEDYFRRFIYPADAELSARLLEDFKSPEALLGLTYSLSKSGQAPVNGDLHSLLKEAESAH
QQRMVDIKREVAPIVQELVDKTSQAKGTATKLKQFQKFADWCGDPDLVEPDATAANWKNI
GTDELQKFAEAKLGGMPQSWATLGELQERIKRSKVQQQEELAKVKQHAAFWVSSRFAELQ
NQRAEMGHDDMLTRLRDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIYNL
AEPHPGTGIFLIGDPKQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVDGVNA
LFERAEELPSGAFLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSVSGEE
KRNKDTFFRAAANHHANLIASLLNDPQAGYYNGDDKLEQRVKTSDIAVLVNNFNEANAIK
KALSDRGLKSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQLLGLPLAEL
EHIHSHEREWEERVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLEDRIHGERQLSDV
LHIAELLQQQSLVLDGIPALVNHFAEQVNERHGFGNNSRTQSDEQQLRLESDDELIKIIT
IHKSKGLQYPLVFMPFVAYTQAEAYRIKPPAVYHDENGELQVLWSKDDDNKQRLSNEILA
EDLRKMYVAVTRAQYATFIALEAVKEHRNNPLFYLLNGGESLTDELYNEVSERWQQAPHT
QLTRLEDDEPLVRALEQEQTTPKLTPRSMPAGRKLERWWVASYSALKYEGAVTKSLQAPQ
SPDEMNLLDERDDDEAEVASAAEPSPDSIHHLPKGAGPGTFLHNLLEESANIGFAQIAGD
AAERTGLVEGFCVSPYWQEHQNSLEHWLDAYLHNQFPINDSGDRISLSALEQYKAEPEFW
FGASEVNAQRLDALVREHILPGHERPALEPNVLNGMLKGFIDLVFEHNGKYYVADYKSNW
LGEDDHAYTEQAMREKILHSRYDLQYVIYTLALHRLLKARLGEAYDYDTHVGGAVYLFLR
GHRAETGGAFCDRPPRALIEQLDELFVGKNVSDKEPT
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgagccagttaccgtcacatacctcaggacatacgctagagaacccgctcgattttccg
ctgaacagcagccgcttaattgaggccagcgccggtaccggtaaaacctacaccattgct
gcgctttatgtgcgtttggttattggacatggctcgcataacggtatggaagaaactgcg
tttgaccgcgaactggtgccgaaaaatattctggtcatgacctttaccaaagctgccacc
gaagagctgagtgatcgtattcgcgcacgcttagccgaagccgcagcttacttccgtgac
ccggaagccgtagaaggtgatcccttcttagcctgcctgcgcgacgactgtgcagcgcag
gggcagaacctgatgcacttggcgcggctgttggatttagcctcgcagtccatggacgaa
gccgcggtgaaaaccattcatggctggtgtcagtccatgctgaaagagcacgcctttgcc
agcggtagcctgttcagccaggacgttgaaaccgacaacgaagagctgcgccttcaggcc
gctgaagactacttccggcgttttatttacccggccgacgctgaactcagcgcccggctg
ttggaggactttaagtcacccgaagctttgttagggctcacttacagtttgagcaaaagc
ggacaggcaccggtcaatggtgacttgcacagcctgttgaaagaagctgaaagcgcgcat
cagcaacgaatggttgatataaagcgggaagttgcgcctattgtgcaggaattggttgat
aaaacctcacaagccaagggcacggcaaccaaactcaaacagtttcagaagtttgcggac
tggtgcggagatcctgacttagttgagcccgacgccaccgcggctaactggaagaatata
ggcactgacgagctacagaagtttgccgaggccaaacttggcggcatgccccaaagttgg
gccactttaggcgagctgcaggaacgtattaagcgcagcaaagtgcagcagcaggaagag
ctggctaaagtaaaacaacacgcggctttctgggtcagtagccgctttgccgaactgcaa
aaccagcgtgccgaaatgggccacgacgacatgctgacccgtttacgggacgcgctgaaa
ggacccagcggcgaagctttagccgccgctattcgtaagcagtacccggtggctatggtg
gacgaatttcaggacaccgacccggttcaatatgagatttttaaccgcatttataattta
gctgagccgcacccgggcaccggaattttcttaattggtgacccgaagcaggccatttac
agcttccgtaacgccgatatttacacctatttaaaagcccggcgtgacaccgaaggccgg
cattataatctggcacgaaacttccgttcgtcgcaggccatggtggatggcgttaatgcg
ctgtttgagcgcgccgaagagctgccgagcggcgcgttcctgtttaaaaccgaagcagaa
aaccagctgccctttaacccagtgggtgcaaatgggctgaagcgcactttcaagcattgc
ctgttatccagcaacttaaaaaccgcaccggcgcttctgtggtcggtgtccggagaggaa
aaacgcaataaagacaccttcttccgcgcagcggcgaaccatcacgctaacctgattgcc
tcgctgcttaatgacccgcaggcgggctattacaacggcgacgataaactcgagcagcgc
gtcaaaaccagtgacattgcggtgctggtaaacaactttaacgaagcgaatgccattaaa
aaggcgttgagcgatcgcgggctgaaaagcgtttatttgtcggaccgggaatcggtattt
gcccagcgcgtagcgaaggatttgctggcgctggtgagtgcctgcgccgagccgcgcgac
ccgtcgctgatacgcagtgctctggcgacacagttacttggcctgccgctggcggagctg
gaacatattcacagccacgaacgcgagtgggaagagcgggttgagcagtttttaagttac
cacgaccagtggcagcgacagggcgtactcgccatgttgcacagcctgttacacgaccat
caggtgccggctaagctgctggaagaccgcattcacggcgaacgccaactgtctgacgtg
ctgcacattgccgagctgctgcaacaacagagcctggtactggacggtattccggccctg
gtgaaccattttgccgagcaggtgaacgaacgccacggtttcggtaacaacagccgtact
cagagtgacgagcagcagctgcgcttagaaagcgacgacgaactgataaaaatcatcacc
attcacaagtcgaaaggcctgcagtacccgttggtgttcatgccttttgtggcctacacc
caggcggaagcctaccggataaaaccgccggcggtgtaccacgatgaaaacggtgagcta
caggtattgtggtcaaaagacgacgacaacaagcagcgcttgagtaatgagatcctcgcc
gaagacttacgcaaaatgtacgtagccgttacccgcgcgcaatacgccacctttattgcg
ctggaagctgtgaaagagcatcgcaacaacccgctcttttacttgctgaacggtggtgag
tcgttaaccgatgagctgtacaacgaagtcagcgaacgctggcaacaggcgccgcatacg
cagttaacgcgattggaagacgacgagcctttagtccgtgcgctggagcaggaacaaaca
acgcctaaactcacaccgcgcagcatgcccgcaggccgcaaactggagcgttggtgggtg
gccagttacagcgcgctgaagtacgaaggtgccgtgacaaaaagcctgcaggcaccgcag
tcgcccgacgaaatgaacctgttggacgagcgcgatgatgacgaagcggaagtcgccagt
gccgccgagccaagtccggacagcattcatcatttacccaaaggcgcggggccgggtacg
tttttgcataatttactggaagaatcggccaatatcggctttgcgcaaatagcaggtgac
gctgccgagcgtaccgggctggtagagggcttttgtgtcagcccgtattggcaggaacac
caaaacagcctagagcactggctggacgcctatttgcacaaccaattccccattaatgac
agtggtgaccgcattagcttaagcgctctggaacaatacaaagccgagccggaattctgg
ttcggtgccagtgaagttaacgcacaaaggctggatgctctggttcgcgaacacattctg
ccgggccacgaacgccctgcactggaacctaatgtgctgaacggcatgctcaaaggcttt
atcgacttggtgtttgagcataacggcaaatattacgtggcagattataagtccaactgg
ctgggcgaagacgaccacgcttacaccgaacaagccatgcgcgagaaaattctgcacagc
cgttacgacttgcagtacgtcatttataccttagccctgcaccgcttattaaaagcgcgg
ctgggtgaggcgtacgactacgacacccatgttggcggcgcagtgtatttgtttttacgc
gggcacagagcagaaaccggcggagctttttgtgacaggccaccgcgggcattaatcgaa
cagctggacgagctttttgtgggtaagaacgtgtctgataaggagccgacatga
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