Ignisphaera aggregans: Igag_1050
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Entry
Igag_1050 CDS
T01307
Name
(GenBank) RNA-binding S1 domain-containing protein
KO
K07573
exosome complex component CSL4
Organism
iag
Ignisphaera aggregans
Pathway
iag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Igag_1050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iag03019
]
Igag_1050
Messenger RNA biogenesis [BR:
iag03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Igag_1050
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Igag_1050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Zn_ribbon_3
RRP40_S1
Zn_ribbon_NUD
Auto_anti-p27
DZR
C1_1
Zn_ribbon_RPB9
Zn_ribbon_RPAB4
Motif
Other DBs
NCBI-ProteinID:
ADM27864
UniProt:
E0SNR8
LinkDB
All DBs
Position
989544..990107
Genome browser
AA seq
187 aa
AA seq
DB search
MSLPPNSIVLPGEKLCVEEEYMPSIGTYSEEGIVRAAIIGRVQYDIINRRIYIKSIKSPV
IPKAGDIVIGVVEQMRDELATINIIGYDTNNLFKHSFTGILHISQASETRIPTLYDVIRV
GDIIRAKVLNNYIPILLSIKEPRLGVIQAYCSRCGSPLIKSGDKLRCSFCGNIENRKIAF
DYILRGK
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgtccttacccccaaatagcattgttttacctggagaaaaactgtgtgttgaagaagaa
tatatgccatctataggaacatatagtgaagaaggtatagttagagctgccattatcgga
agagtgcagtatgatatcatcaatagaaggatatatataaaatctataaagagtcctgtg
attcctaaagctggagatatagttattggagttgtagaacagatgagagatgaactagca
acaattaatataattggatacgacaccaataatctattcaaacatagttttacaggtatt
ctccatatatcacaggcatctgaaacaagaattccaacactttatgacgttataagggtt
ggagatattatcagagctaaagttttaaataactatataccgatactactatcaattaaa
gaacctagattgggggttatacaggcgtattgttctcgatgtggatctccattaataaaa
tcgggagacaaacttcgatgtagcttttgtggaaatattgagaatagaaaaatagcattt
gactatatattgaggggtaaatag
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