Ignisphaera aggregans: Igag_1503
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Entry
Igag_1503 CDS
T01307
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
iag
Ignisphaera aggregans
Pathway
iag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Igag_1503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iag03019
]
Igag_1503
Messenger RNA biogenesis [BR:
iag03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Igag_1503
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Igag_1503
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
RRP40_S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
ADM28305
UniProt:
E0SQX5
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All DBs
Position
1397955..1398716
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AA seq
253 aa
AA seq
DB search
MYEKEAISLQTSKRILVVPGDSVQISQDVVIDPQQILYLYKKDDNTFISTITALLDFENI
DDKKKLRVIPLKGRYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLNASDYLGRSFNPL
TDNIRKYLEIGDVVVGKIATFDRSRGPILTVQDKGLGKVVDGSLIEIEPIKVARVIGKKK
SMLNMLIEQTKCDILVGNNGRIILRCPNPELEYIAILAIKKIESEAHTTGLTERIREFII
EEKVKRGLIKYEV
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
ttgtatgaaaaggaagcaataagtttacagacatccaaaaggattttagtggtaccagga
gattctgtgcagatatctcaggatgtagttatagatccccaacaaattctatatctttat
aaaaaggatgacaatacatttatatcaacaataacagctcttttagattttgagaatatt
gatgataagaaaaaattgagggtaattcctcttaagggacgatatataccaagagaaggg
gatattgtaataggaattgttgtagatgtaacactttcgtcatggattatagatataaat
tcgccttatctttcagtattgaatgcttctgattatcttggacgtagttttaatccattg
actgataatattcgaaaatatttagagataggggatgtagttgtagggaagatagctaca
ttcgatagatctcgtggacctatattgacagttcaagataaaggtcttggaaaagtagtt
gacggttctttaattgagatagagcctataaaagtagcgagagttataggtaagaaaaaa
tctatgctaaatatgttgatagaacagacgaagtgtgatatacttgtcggaaataatggt
agaataattcttagatgtccaaatccagagttagagtatatagctattttagctataaag
aagatagaaagtgaggcacatactacaggtttaaccgagaggattagagagtttataatt
gaagaaaaagttaagaggggattgataaaatatgaagtctga
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