| Entry |
|
|---|
| Symbol |
rpoB
|
|---|
| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
|
|---|
| KO |
|
|---|
| Organism |
ial Ignavibacterium album
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:ial00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IALB_0905 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ial03021]
IALB_0905 (rpoB)
03400 DNA repair and recombination proteins [BR:ial03400]
IALB_0905 (rpoB)
Enzymes [BR:ial01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IALB_0905 (rpoB)
Transcription machinery [BR:ial03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IALB_0905 (rpoB)
DNA repair and recombination proteins [BR:ial03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IALB_0905 (rpoB)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
1007363..1011121
|
|---|
| AA seq |
1252 aa
MDNNRISFSRIKSVLDVPDLLGIQTETFEDFLQHNVPPSKRENKGLQQVFTTNFPVLDNK
ENYRLDFLEYYVEKPRFTVQECLERGLTYSAPLKAKLRLSTKDQDTQEFINTVEQEVYLG
NLPFMTEKGTFIINGAERVIVSQLHRSPGVAFSQTLHPNGTPIYTARIIPLRGSWVEFAT
DINYVMYVYIDRRKKFPATTLLRAIGFESDEQILKLFDLVEEVPVKKSKLENFVGRMVAS
DLFDMSTGEIFLTRGAIFSEEDVERVKEAEIDVLKFIKSDRSPDQDLIVNTLQKDTSTSR
EEALYSIYRQLRTGEAPDLESAEQLIEKLFFNDKRYDLGEVGRHRMNDKLKLNVPENVTV
LTNEDIVAIMRYIIDLKNGIAPIDDIDHLGNRRIRTVGEQLSQQFNVGMARMARTIKERM
NMRDTENFTPQDLVNARTITSVINAFFGTNQLSQFMDQTNPLAEMTHKRRMSALGPGGLT
RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLTIYARVNKYGFLETPYRKVLKGKV
TNEVEYLSAEQEDKFIIAQANAPINEQGKFLNDRVKARYKGEFPIVHPEEVHYMDVAPAQ
IVSAAAALIPFLEHDDANRALMGSNMQRQAVPLLKPEAPIVGTGMERKVAYDSRALLVAE
DDGVVASVDANRIVVKYDINPNSFEALTSFNETREVVYELTKFQGTNQETCVNQKPIVKE
GQRVKKGDVLADGAATDQGELALGRNVLVAFMPWRGYNFEDAIIISERVVREDVYTSIHI
EEFELQVRETKRGEEELTREIPNVSEEAVKNLDENGIIREGAEVKEGDILIGKITPKGET
DPTPEEKLLRAIFGDKAGDVKDASLRASPGLRGTVIKTRLFSRKKRDNESKKQEKAALEQ
LDQDFKKKLQQHYNKLVEKLTKITEGETTTGIRDLDGSVVLRSGTTIKEKTFSEMEDVTK
LDYTADWFESKKVNNMVKTLFKNYFDIKVDIEEEYKKEKVKIQSGDELPPGIVQLAKVYV
AKKRKLSVGDKMAGRHGNKGVVAKIVPVEDMPFLPDGTPVDIILNPLGVPSRMNLGQLYE
TVLGWVGKKMGVKFATPIFDGAKLEDVEQWLQKAGIDPGSKTDLYDGRTGEKFHQKVTCG
YIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGYGASHILQ
EILTVKSDDVAGRAKVYESLVKGENLPEPNIPEAFNVMIKELQGLGLDIKIN |
|---|
| NT seq |
3759 nt +upstreamnt +downstreamnt
ttggataataaccgcatttcttttagccgaattaaatctgttctcgatgttcctgatttg
ttgggaattcagaccgaaacatttgaagattttcttcaacacaatgttcctccatcaaaa
agagagaacaaaggtctgcaacaggtttttactactaatttcccggtgcttgataataaa
gaaaattaccgtcttgattttttagagtattatgtagaaaaacccagattcactgttcag
gaatgtctggaaagaggtttgacttattccgcaccactgaaagccaaactcaggctttca
actaaagatcaggatactcaggagtttataaatactgttgagcaggaagtttatcttggc
aatcttccctttatgacagaaaagggaacatttattattaacggtgctgaaagagtaatt
gtgtcacaattacatcgttcaccaggagttgcattctctcaaactctgcatccaaatggt
actcctatttatacggcgagaattatccctctgagaggttcatgggttgaatttgcaaca
gatataaattatgtaatgtatgtttatatcgatcgaagaaaaaaattccctgcaactact
ttactcagagcaataggttttgaatcagacgaacaaattttaaaactttttgatctggtt
gaggaagttccggttaagaaatccaagttggaaaattttgtaggaagaatggttgcaagc
gatttatttgacatgtcaaccggtgaaatcttccttaccagaggggcaatctttagtgaa
gaagatgttgaaagagttaaagaagcagaaattgatgtacttaagttcattaaatctgat
cgctcaccagatcaggatttaattgttaatactcttcagaaagatacttctacatcaaga
gaagaagccctctattcaatttacaggcaattaaggacaggcgaagctcctgatttggaa
tcagcagagcagcttattgaaaaattattctttaacgataaaagatatgatttgggcgaa
gttggtcgtcacagaatgaatgacaaactgaaattgaatgttcccgaaaatgtaactgtg
cttacgaacgaagatatagttgcaataatgagatatataattgatcttaaaaatggaatt
gctccgatagacgatattgatcatttgggtaacagaagaatcagaactgttggcgagcag
ctttcacagcagtttaatgttggtatggcgcgtatggcaagaactattaaagaaagaatg
aatatgcgcgataccgaaaactttacaccacaggatttggtaaatgcaagaactataaca
agcgttataaatgcattcttcggaacaaatcagctctcacaatttatggatcaaactaat
ccattagctgagatgacacacaagcgaagaatgtctgcattaggtcctggtggacttacc
cgcgaaagagcaggatttgaagtaagagatgttcactacacacattacggcagactttgt
ccgattgaaactcccgaaggaccaaacataggacttatatcctctcttacaatttatgct
cgcgttaataaatatggatttttagaaaccccttatagaaaagttttaaaaggaaaagtt
acgaatgaagttgaatatctttctgctgaacaggaagacaaatttatcattgctcaggca
aatgctccaattaatgaacaaggtaagtttcttaatgatagagtaaaggcaagatacaaa
ggtgaatttccaatagtacatcctgaagaagttcattatatggatgttgcacctgctcag
attgttagtgccgctgcagctttaattccattccttgaacacgatgatgctaacagagct
ttgatgggctcaaacatgcagcgtcaggcagttccattattaaaacctgaagctccaatt
gtcggaactggtatggaaagaaaagttgcgtatgattcaagagctctgcttgttgctgaa
gatgatggtgttgtagcaagtgttgacgcaaacagaatagttgttaagtatgatattaat
cccaatagctttgaagctcttaccagctttaatgaaaccagagaagtagtttatgaactc
acaaaattccagggcacaaaccaggaaacttgtgtaaatcaaaagccaattgttaaagaa
ggtcagcgagttaaaaaaggtgatgtattggcagatggagctgcaactgatcaaggtgaa
ctcgcacttggtaggaatgttttggtcgcatttatgccctggagaggttacaactttgaa
gatgctattatcatcagtgaaagagttgtcagagaagatgtttacacttcgattcacatc
gaagaatttgagttgcaggttagagaaactaaacgtggcgaagaagaattaacaagagaa
attccgaatgtaagtgaagaagcagttaaaaatcttgacgagaatggaattatcagagaa
ggtgctgaagttaaagaaggtgatattcttatcggaaaaattactccgaaaggtgaaacc
gatcctacaccggaagaaaaactgcttcgtgcaatattcggagataaagctggtgatgta
aaagatgcctcgctacgtgcttcgcctggtttgagaggtactgtaatcaaaacaagatta
ttcagtcgcaagaaaagagataacgaatctaaaaaacaagagaaagctgcacttgaacag
cttgatcaggatttcaaaaagaaattacagcagcattataacaagctcgttgagaaatta
acaaagattactgaaggcgaaactacaacaggcatcagagatcttgatggaagcgttgtt
ttaagaagcggaacaaccattaaagaaaaaactttttctgaaatggaagatgttacaaag
cttgattatactgctgactggttcgaatctaaaaaagtgaataatatggttaagactctc
ttcaagaattatttcgatataaaagttgatattgaagaagagtacaaaaaagaaaaagtt
aaaattcaaagtggagatgaattacctccgggaattgttcagctcgcaaaagtttatgtt
gctaaaaagcgtaaactttctgttggcgataaaatggctggacgacacggtaataaaggt
gtcgttgccaaaatagttcctgttgaagatatgcctttcttaccagatggaactcctgta
gatattattcttaatccgcttggtgtgccgtcaagaatgaatctaggacagctgtatgaa
acagttctcggctgggttggaaagaagatgggagttaaattcgcaactccgatttttgat
ggtgctaagttggaagatgttgagcaatggttacaaaaagcaggaattgatcctggttcg
aaaactgacttatatgatggaagaaccggtgaaaaattccatcaaaaggtaacctgcggt
tatatctatatgcttaaactcagtcaccttgtcgatgataagattcacgcaaggtcgatt
ggaccttactcacttatcacgcaacaaccactcggtggtaaagctcaatttggtggtcag
cgattcggagaaatggaggtttgggcactagaaggttatggagcttcgcatattcttcag
gaaatactgactgttaagagtgatgatgttgccggtcgtgcaaaagtttatgaatcatta
gttaaaggtgaaaatcttcctgagccgaatattcctgaagcatttaatgtaatgattaaa
gaattacaaggtcttggtctggatattaagattaactaa |
|---|
