Iamia sp. SCSIO 61187: HC251_01850
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Entry
HC251_01850 CDS
T07394
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
iam
Iamia sp. SCSIO 61187
Pathway
iam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
iam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HC251_01850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iam03400
]
HC251_01850
Enzymes [BR:
iam01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HC251_01850
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HC251_01850
DNA repair and recombination proteins [BR:
iam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HC251_01850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Zn_Ribbon_TF
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QYG91302
LinkDB
All DBs
Position
complement(391389..392225)
Genome browser
AA seq
278 aa
AA seq
DB search
MPELPEVRAHAERLDGAFAGTRLASFRALSFTALKTFAPAPEVAVDHPLAYVDQRGKHLL
LDFGVATYVIHLMQGGRLRPDEKQSAKPRGGVARWVFDDGRALLLTEAGTERKAGVWVID
GDPEVQPPLDHLGPEADTVTPEALLEILHSTNGRIHGLLRDQRVIAGIGRRLANEVCHRA
RLSPFAMSGKLDGADAERLVEAMRACISEGLAFERGREDMSASKDRPGAVHHRKGEECPD
CGDVVRTVEYRSYEVAYCASCQTGGKVLADNTTSKFLK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtccgcgcccacgccgaacggctcgacggcgccttcgccggc
acccgcctggcgtcgttccgggccctgtcgttcaccgccctgaagaccttcgcccccgcc
cccgaggtcgcggtcgaccaccccctcgcctacgtcgaccagcggggcaagcacctcctg
ctcgacttcggcgtggccacctacgtgatccacctgatgcagggcggccggctgcgcccg
gacgagaagcagtcggccaagccgcgcggcggcgtggcccgctgggtgttcgacgacggc
cgggccctcctcctcaccgaggccggcaccgagcgcaaggccggggtctgggtcatcgac
ggcgaccccgaggtgcagccgccgctcgaccacctcgggcccgaggccgacacggtcacg
cccgaggcgctgctcgagatcctgcactcaaccaacggccgcatccacggcctgctacgg
gaccagcgcgtgatcgccggcatcggccgacggctggccaacgaggtgtgccaccgggcc
cggctgtcgccgttcgccatgagcggcaagctcgacggtgccgatgccgagcggctggtg
gaggccatgcgggcctgcatctccgagggtctggccttcgagcggggccgggaggacatg
tcggcctccaaggaccgccccggtgccgtccaccaccgcaagggcgaggagtgccccgac
tgcggcgacgtggtgcgcaccgtcgagtaccggagctacgaggtcgcctactgcgcctcg
tgccagaccggcggcaaggtcctcgccgacaacaccacgtccaagttcctgaagtga
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