Iamia sp. SCSIO 61187: HC251_03320
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Entry
HC251_03320 CDS
T07394
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
iam
Iamia sp. SCSIO 61187
Pathway
iam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HC251_03320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iam03021
]
HC251_03320
03400 DNA repair and recombination proteins [BR:
iam03400
]
HC251_03320
Enzymes [BR:
iam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HC251_03320
Transcription machinery [BR:
iam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HC251_03320
DNA repair and recombination proteins [BR:
iam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HC251_03320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QYG91563
LinkDB
All DBs
Position
702129..706151
Genome browser
AA seq
1340 aa
AA seq
DB search
MLDVNDFDQLKIGLATADSIRTWSNGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPTVHIWYLRGTRSWLAYLLMG
TEVREELKAKQLEKVIYFAANLVTWVDEERRHEDLPNLEAEKNIEKDELAQKRDLELAQM
LEDHEKAIAELEKEGAKDADLKTRTKAFEKDQAIVREQYDVELETLDRAFDEFSKMFARQ
IIDDEMLWRELVYRYGDYFEGGMGADAIKQLIDRIDFDVEEVKLREALDPEEGRKPLSAQ
RKQKAVKRLKIVAAFNRRDEHGRRINNPGAMILDVVPVIPPELRPMVQLDGGRFATSDLN
DLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKS
LSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKIMALELFKPFVMKKLV
DAELAQNIKSAKRMVERRRPQVWDVLEEAIKEHPVMLNRAPTLHRLGIQAFEPVLVEGKA
IQIHPLVCTAFNADFDGDQMAVHLPLSSEAQAEARVLMLSANNVLSPAHGRPLVTPTQDL
IIGGYYLTEKVEGALGEGRVFRHLHEVERAYEDGHVSLHAPITLRTVTESEDGERVVDDL
ETTPGRLIFNDALPRPEQALLDPEGNPLAQIAYINQRVDKKVMGQIVDDLAHGYPKAVVA
ESLDAIKNLCYRFASKSGITISVDDVKTPESKAGILEAHEVRAQKVEDQFRKGIITDGER
RQKEVEIWTAATDEVRRDMEVGLREEQFNPIEMMVGSGARGNMMQVRQIAGMRGLVANPR
GDMIPRPIKSNFREGLAMLEYFIATPGARKGLVDTALRTADSGYLTRRLVDVAQELIIND
EDPFTRAEATGTPVMGIWLEDVYPDTPAKRTHLETRLFSRVLAADVTLSDGSVIPAGTTV
MEREMERIRDDEGVTRVRVLSPLTDDSVTGVSALSYGMSLATGRAIEVGEAVGVIAAQSI
GEPGTQLTMRTFHTGGVATGGGDIAGGLPRVVELFEARSPKGKATLARTSGVVRVGDDEG
KGRVITIVGDDGTEEVHTVPMQARLAVEEGQEVKAGDDIVPGPRDPKELLEIKGLRETQR
YLVEQVQKVYRDQGVSIHDKHIELIVRQMTRRVAISDPGDSEFLPDERVDRKTFRDTNRV
LVEEGKQPAEARDEIMGITKASLATDSWLSAASFQETTRVLTEAAIESRSDSLLGLKENI
IIGKLIPAGTGMPQYRDVSTHAPEYEPMAFYSSDGGEGFGDEDFDASSYLASISGSLRGE
ATVAGDGPELTAVPDEGAAS
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgctggatgtcaacgacttcgaccagctgaagatcggtctcgccaccgcggactccatc
cgcacgtggtccaacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgaccaaggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgctccaaggtccggcgcgagcgcatgggccacatcgagctggccgccccg
accgtccacatctggtacctccgcggcacccggtcgtggctggcctacctgctgatgggc
accgaggtccgtgaggagctcaaggccaagcagctggagaaggtcatctacttcgccgcc
aacctcgtgacctgggtcgacgaggagcgccgccacgaggacctgccgaacctcgaggcc
gagaagaacatcgagaaggacgagctggcccagaagcgcgacctcgagctggcccagatg
ctcgaggaccacgagaaggccatcgccgagctggagaaggagggggccaaggacgccgac
ctcaagacccggaccaaggccttcgagaaggaccaggcgatcgtccgcgagcagtacgac
gtggagctcgagaccctcgaccgggccttcgacgagttctccaagatgttcgcccgccag
atcatcgacgacgagatgctgtggcgcgagctggtctaccgctacggggactacttcgag
ggcggcatgggcgccgatgccatcaagcagctcatcgaccgcatcgacttcgacgtcgag
gaggtcaagctccgcgaggcgctcgaccccgaggagggccgcaagcccctgtcggcccag
cgcaagcagaaggccgtcaagcgcctgaagatcgtcgccgccttcaaccgccgcgacgag
cacggccgccggatcaacaaccccggcgccatgatcctcgacgtcgtcccggtgatcccg
ccggagctgcggcccatggtccagctcgacggtggccgcttcgccacctcggacctcaac
gacctgtaccgccgggtcatcaaccggaacaaccggctcaagcgcctcctcgacctcggt
gcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgccctg
ttcgacaacggccgccgcggccggcccgtcaccggcccgggcaaccgcccgctgaagtcg
ctctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaagcgc
gtcgactactccggccgttcggtcatcgtggtcggcccgaccctgaagctgcaccagtgc
ggcctgcccaagatcatggccctcgagctgttcaagccgttcgtcatgaagaagctggtc
gacgccgagctggcccagaacatcaagtcggccaagcgcatggtcgagcggcgccgcccg
caggtctgggacgtgctcgaggaggccatcaaggagcacccggtcatgctgaaccgggcc
cccacgctgcaccgcctcggcatccaggccttcgagcccgtgctggtcgagggcaaggcc
atccagatccaccccctggtgtgcaccgccttcaacgccgacttcgacggcgaccagatg
gccgtccacctgcccctgtcgtcggaggcccaggccgaggcgcgggtgctcatgctgtcg
gccaacaacgtgctgtcgcccgcccacggccggccgctcgtcaccccgacccaggacctc
atcatcggtggctactacctcaccgagaaggtcgagggggcgctcggcgagggccgcgtg
ttccgccacctgcacgaggtcgagcgggcctacgaggacggccacgtcagcctccacgcc
ccgatcaccctccggaccgtcaccgagtccgaggacggcgagcgcgtcgtcgatgacctg
gagaccacccccggtcgcctgatcttcaacgacgccctgccccgccccgagcaggccctg
ctcgaccccgagggcaacccgctggcccagatcgcctacatcaaccagcgcgtcgacaag
aaggtcatgggccagatcgtcgacgacctcgcccacgggtaccccaaggcggtcgtggcc
gagagcctcgatgccatcaagaacctctgctaccggttcgcctccaagtccgggatcacc
atctcggtcgacgacgtgaagacccccgagagcaaggccggcatcctcgaggcccacgag
gtccgggcgcagaaggtcgaggaccagttccgcaagggcatcatcaccgacggcgagcgg
cggcagaaggaggtcgagatctggaccgcggccaccgacgaggtgcgccgtgacatggag
gtcggcctccgcgaggagcagttcaaccccatcgagatgatggtcggctccggtgctcga
gggaacatgatgcaggtccgccagatcgcgggcatgcgtggcctggtggccaacccccgt
ggcgacatgatcccccgcccgatcaagtcgaacttccgcgagggcctggcgatgctcgag
tacttcatcgccacccccggcgcccgcaagggcctcgtcgacaccgccctccgcaccgcc
gactcgggctacctcacccggcgcctggtcgacgtggcccaggagctcatcatcaacgac
gaggacccgttcacccgggccgaggccaccggcacgccggtgatgggcatctggctggag
gacgtctaccccgacaccccggccaagcggacccacctcgagacccgcctgttcagccgg
gtcctggccgccgacgtcaccctctccgacgggtcggtcatcccggccggcaccaccgtc
atggagcgggagatggagcgcatccgcgacgacgagggcgtcacccgcgtccgcgtcctc
tcgcccctcaccgacgactccgtcaccggcgtctcggccctctcctacgggatgtccctc
gccaccggccgggccatcgaggtgggcgaggcggtcggcgtcatcgccgcccagtccatc
ggcgagcccggcacccagctgaccatgcggaccttccacaccggcggcgtcgccaccggc
ggcggcgacatcgccggcggtctgccccgcgtcgtggagctgttcgaggcccgcagcccg
aagggcaaggccaccctggcccgcacctcgggtgtggtccgcgtcggcgacgacgagggc
aagggccgggtcatcaccatcgtcggcgacgacggcaccgaagaggtccacaccgtcccg
atgcaggcccgtctggccgtcgaggagggccaggaggtcaaggccggcgacgacatcgtc
cccggcccccgcgaccccaaggagctgctggagatcaagggcctgcgcgagacgcagcgc
tacctggtcgagcaggtccagaaggtctaccgggaccagggcgtgtcgatccacgacaag
cacatcgagctgatcgtccggcagatgacccgccgcgtcgccatctcggaccccggtgac
tcggagttcctgcccgacgagcgggtcgaccgcaagaccttccgggacaccaaccgcgtc
ctggtcgaggagggcaagcagccggccgaggcccgtgacgagatcatgggcatcaccaag
gccagcctggcgaccgactcgtggctgtcggccgcctccttccaggagacgacccgggtg
ctcaccgaggccgccatcgagtcccgctcggactcgctgctcggcctgaaggagaacatc
atcatcggcaagctcatccccgccgggacgggcatgccgcagtaccgggacgtgagcacc
cacgctcccgagtacgagccgatggcgttctactcctccgacggtggcgagggcttcggc
gacgaggacttcgacgccagctcgtacctggcgagcatctcgggctcgctccggggtgag
gccaccgtggccggcgacggccccgagctgaccgccgtccccgacgagggcgccgccagc
tag
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