Iamia sp. SCSIO 61187: HC251_07480
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Entry
HC251_07480 CDS
T07394
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
iam
Iamia sp. SCSIO 61187
Brite
KEGG Orthology (KO) [BR:
iam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iam03019
]
HC251_07480 (hrpA)
Enzymes [BR:
iam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HC251_07480 (hrpA)
Messenger RNA biogenesis [BR:
iam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HC251_07480 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
CON_HrpB
nSTAND3
nSTAND_NTPase5
SLFN-g3_helicase
T2SSE
NACHT
WHD_HA2
FtsK_SpoIIIE
RsgA_GTPase
PhoH
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QYG95439
LinkDB
All DBs
Position
complement(1530565..1534578)
Genome browser
AA seq
1337 aa
AA seq
DB search
MPSAAGPSEADLRDRIAGLGFHDRARLTDLLDGRAPRGGRGRRRRRGPRPAPARPEDLAA
EVAAAEARLARRRESLPVPTYPPELPITERRDELLAAIADHQVVVVAGETGSGKSTQLPK
LCLELGRGASGLIGHTQPRRVAARAVAERVAEELGTELGQAVGYTVRFTDRVGDDTHVKV
MTDGILLAEVQRDRLLSRYDTLIVDEAHERSLNVDFLLGYLHQLLPQRPDLKLIITSATI
DTARFAAHFGGAPIIEVSGRTYPVEVRYRPYGELVAAEEGDDVIDDDRDQTEAVVDAVDE
LAREGPGDILVFLSGEREIRDTADALEAVGRPDTEILPLYARLSAAEQHRVFTPHRGRRV
VLATNVAETSLTVPGVRYVVDAGTARISRYSHRLKVQRLPIEEVSQASANQRAGRCGRVA
PGICIRLYSEEDYAARPEFTDPEILRTNLASVILQMANLGLGDVAAFPFLDPPEARSVRD
GVALLEELGAFHPGHSAGASPAVQPGAPANARRLTPIGRRLVRLPIDPRLGRMILESERQ
GCVREVLVIAAALSIQDPRERPLEKRGEADEMHRRFAVPGSDLLALVALWDHLEERRRVL
TSNRFRRECKAEFLNHLRVREWRDLHRQLERAAAPLGIVPGREEATPDQVHRAVLAGLLS
QIGMRDRETREFRGARGARFQIAADSALARKPPAWVMAAELVETNRLWARGVAGIRPEWA
EDLAGPLAKRSHDDVRWDERSGRAVATERVMLYGLPIVPGRTIGYDRVDREHARELFIDH
ALVRREWETRHRFVDANEAFLDEARALGDRLRRADLFDHDETLLRFYDGRVGDEVVSGRH
FDSWWKAARRDDPDLLTLTLADLVGDDPDVDVAAHPDVWHQGDLALPITYRFDPDDDLDG
ATVHIPLAVLDRVEPWDFDWQIPGYRKDLARALVATLPKAVRRDLPPLAATAEEAADRLR
FEARPMVEALADVLRELTGVRVAPTDLDVRQVPPHLRLTFAVDDGGTTLAFGKDLDAVRR
LVASRVRRAVAAAVALAHPGLERSGLTAWPGGDLPRVVRADASPDVAADNVVEGYPALVD
EGDAVAVRVLSRPDAAERAMAAGIRRLVLLAVPVGVRGLEREIPDAVRRALVVLPDITVG
ALLRDVITASATATVADHGGATWTEAGFATVVAGARADLRTTASRTLRDAGRVLEAAAEV
VPALDRLTAPTLTASVDDARAHLARLVRPGFVATAGTARLPDVVRYVQGIGARLAKLPEA
PGRDASHVVEVVALERSYQQLLGALTATQVTARVVAAGWMLEELRVSLFAQALGTKVAVS
PRRVASELEALWSGDLD
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgccgtccgccgccggaccgagcgaggcggacctgcgggaccgcatcgccggcctcggg
ttccacgaccgggcccggctcaccgacctgctcgacggtcgcgccccccggggcgggcgg
ggccgtcgccggcgacggggcccgaggccggcaccggcccggcccgaggacctggccgcc
gaggtggcggcggccgaggcccgcctggcccgccggcgcgagagcctcccggtcccgacc
tacccgcccgagctccccatcaccgagcggcgcgacgagctgctggccgccatcgccgac
caccaggtggtcgttgtggccggcgagaccggctcggggaagagcacccagctgcccaag
ctgtgcctggagctggggcggggcgcgtcgggcctgatcggccacacccagccccgccgg
gtggcggcccgggccgtggccgagcgggtggccgaggagctgggcaccgagctgggccag
gccgtcggctacacggtccgcttcaccgaccgggtgggcgacgacacccacgtgaaggtg
atgaccgacggcatcctgctggccgaggtccagcgggaccggctgctcagccggtacgac
accctgatcgtcgacgaggcccacgagcgcagcctcaacgtcgacttcctgctcggctac
ctccaccagctgctcccgcagcgcccggacctcaagctgatcatcacctcggcgacgatc
gacaccgcccggttcgcggcgcacttcggcggcgccccgatcatcgaggtgtcgggccgg
acctacccggtcgaggtccggtaccggccctacggcgagctggtggcggccgaggagggc
gacgacgtcatcgacgacgaccgcgaccagaccgaggccgtcgtcgacgccgtcgacgag
ctggcccgcgaggggccgggcgacatcctcgtgttcctcagcggcgagcgggagatccgc
gacaccgccgacgccctggaggcggtgggccggcccgacaccgagatcctccccctctac
gcccgcctgtccgcggccgagcagcaccgggtcttcaccccccaccggggccgccgggtg
gtgctggccaccaacgtggccgagacctcgctgacggtcccgggcgtgcgctacgtcgtc
gacgccggcaccgcccgcatctcccgctacagccaccgcctcaaggtccagcgcctcccc
atcgaggaggtcagccaggcctcggcgaaccagcgggccgggcgctgcgggcgcgtcgcc
cccgggatctgcatccgcctctactccgaggaggactacgcggcccggccggagttcacc
gatcccgagatcctgcggaccaacctggcctcggtcatcctccagatggccaacctgggt
ctgggcgacgtcgccgccttccccttcctggatccgcccgaggcccgctcggtccgcgac
ggcgtcgccctccttgaggagctcggggcgttccacccgggccactcggctggcgcctcg
ccggccgtgcagccgggggcgccggcgaacgcccgccgcctcacacccatcggccgacgc
ctggtccggttgccgatcgacccccgcctgggccgcatgatcctggagtccgagcgccag
gggtgcgtgcgcgaggtcctcgtcatcgccgccgccctgtcgatccaggaccctcgggag
cggccgctcgagaagcggggcgaggccgacgagatgcaccgccgcttcgccgtgcccggg
tcggacctcctggccctcgtcgccctgtgggaccacctcgaggagcgtcgccgggtgctg
acgtccaaccgcttccggcgcgagtgcaaggccgagttcctcaaccacctgcgggtccgg
gagtggcgcgacctccaccgccagctggagcgggccgccgcccccctgggcatcgtcccc
gggcgcgaggaggccacgcccgaccaggtgcaccgggccgtcctcgccgggctgctgtcg
cagatcgggatgcgcgaccgcgagacgcgcgagttccgcggcgcccggggggcgcgcttc
cagatcgccgccgactcggcgctggcccggaagccaccggcgtgggtcatggcggccgag
ctggtcgagaccaaccggctgtgggcgcggggcgtggccgggatccgtcccgagtgggcc
gaggacctcgccgggcctctcgccaagcggtcccacgacgacgtccgctgggacgagcgc
agcggccgggcggtggccaccgagcgggtgatgctctacgggctgcccatcgtccccggt
cgcaccatcggctacgaccgcgtcgaccgcgagcacgcccgcgagctgttcatcgaccac
gccctggtccggcgggagtgggagacgcgccaccgcttcgtcgacgccaacgaggccttc
ctcgacgaggcccgggccctgggcgaccggctgcgacgggccgacctgttcgaccacgac
gagacgctcctgcggttctacgacgggcgggtcggcgacgaggtggtgtcgggccgccac
ttcgacagctggtggaaggccgcccggcgcgacgaccccgacctgctcaccctcaccctc
gccgacctggtcggcgacgaccccgacgtggacgtggccgcccacccggacgtgtggcac
cagggcgacctggccctgccgatcacctaccgcttcgaccccgacgacgacctcgacggc
gccaccgtccacatccccctcgccgtgctcgaccgggtcgagccgtgggacttcgactgg
cagatccccggctaccgcaaggacctggcccgggccctcgtcgccaccctgcccaaggcc
gtgcgccgggacctgcccccgcttgccgccaccgccgaggaggcggccgaccggctgcgg
ttcgaggcgcggccgatggtcgaggccctggccgacgtgttgcgcgagctcaccggggtc
cgggtcgccccgaccgacctcgacgtgcgccaggtcccaccccacctgcgcctcaccttc
gcggtggacgacggggggaccacgctggcgttcggcaaggacctcgacgccgtccggcgc
ctggtggcgtcccgggtccggcgggccgtcgccgccgcggtcgcgctggcgcacccgggc
ctggagcgctccgggctgacggcctggcccggcggtgacctgccccgcgtcgtccgcgcc
gacgcctcccccgacgtcgccgccgacaacgtggtcgagggctacccggccctggtcgac
gagggcgacgccgtcgccgtccgcgtgctgtcccggcccgacgccgccgagcgggccatg
gccgcgggcatccgccggctggtcctgctggccgtgcccgtcggtgtgcggggcctggag
cgggagatccccgacgccgtccgccgggccctcgtcgtcctccccgacatcaccgtcggc
gccctgctccgcgacgtcatcaccgcgtcggccacggcgacggtggccgaccacggcggg
gcgacgtggaccgaggccgggttcgcgaccgtcgtcgccggcgcccgggccgacctccgc
accaccgcgtcccggacgctgcgggacgccggccgggtcctcgaggcggcggccgaggtg
gtgccggcgctcgaccgcctgaccgcccccacgctcaccgcctcggtggacgacgcccgg
gcgcacctggcccgcctcgtgcgccccggcttcgtcgccaccgccgggacggcccggctg
cccgacgtggtccgctacgtccagggcatcggcgcccgcctggccaagctgcccgaggca
ccgggccgggacgcgtcccacgtcgtcgaggtggtggccctggagcgctcgtaccagcag
ctgctgggcgccctcaccgcgacgcaggtgacggcccgggtggtggccgccggctggatg
ctcgaggagctgcgggtcagcctcttcgcccaggccctcggcaccaaggtggcggtcagc
ccccgccgggtggcgtcggagctcgaggccctctggtccggcgacctcgactga
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