Iamia sp. SCSIO 61187: HC251_08775
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Entry
HC251_08775 CDS
T07394
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
iam
Iamia sp. SCSIO 61187
Pathway
iam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC251_08775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iam03019
]
HC251_08775
03009 Ribosome biogenesis [BR:
iam03009
]
HC251_08775
Enzymes [BR:
iam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HC251_08775
Messenger RNA biogenesis [BR:
iam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HC251_08775
Ribosome biogenesis [BR:
iam03009
]
Prokaryotic type
rRNA processing factors
HC251_08775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Hus1
Motif
Other DBs
NCBI-ProteinID:
QYG92526
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All DBs
Position
1817854..1820112
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AA seq
752 aa
AA seq
DB search
MTDADQTPRGATASPEPTPRAERPAPAGTAPEPSGDRPTGSSDGRSAGGSRRDRDDDAPG
SSRPSDDSPSDSSGSSNAPGSSSASSASGSSGDGTSGAPGGGTRRRRGSRGGRGRSGGDG
DSTAAGADGDDTTRSAGGRSPRFEGDDATRSAGGRSPRSEGDDATRSAGGRTPRSDGDAA
PAGDAPPAARPRIGDTRPAPPAAGGDGAPVAAKAEGEGGSAGGRKRRRRGGRGRGKGGGQ
GGGQGEQNGGGDRSGGRGGQGGGQQGRGGGQGGQQGRGGQGRGGRGDGRGGQRSVQPVTA
LTGEAVELDDDVLAARRGRERKGKAVGRYLMAVHVQPEATQIAILEGRSLIEHQVSRPAD
DISQIHGNIYLGKVQNVLPGMEAAFVDIGTPKNAVLYRSDARADDDLDQPKQRSNAKIED
MLRAKQLILCQVTKNPIAHKGARLTQEVSLPGRFVVLVPNSTTYGISKRLPDDERKRLRN
ILDKVRPKGHGLIVRTAAEGVTASEIEADVTRLASQWQQIEALAERARSQGPTLLYREPD
TAIRMIREELTNDFRKVVIDDRHLFEQVSDYVSSISPEMAERVELYDPATEPLPLFEKHH
IHEQLHKALDRKVWLPSGGSLIIEHTEALTVIDVNTGKNVGTSSLEQTVYLNNLEAAEEV
ARQLRLRDIGGIIVIDFIDMEIAKNRDDVIKTFRDALARDKTRTQVFDISQLGLVEMTRK
RIGEGLLESFAQGCPHCEGRGVVLDTSLLPKG
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgccgaccagaccccccgcggggccacggcctcccccgagccgacaccccgg
gctgagcgcccggcccccgccggcaccgcccccgagccgtcgggggaccgccccaccggc
tcgtccgacggccgatcggccggcggctcccgtcgcgaccgcgacgacgacgctcccggc
tcatcgcgaccctcggacgacagcccgtccgactcgtcgggctcgtcgaacgcgccgggc
tcgtcgagcgcgtcgagcgcgtcgggctcgtccggcgacggcacctccggcgcgcccggt
ggcggcacccgccgccggcgcggctcgcgcgggggtcggggccgcagcggcggcgacggc
gacagcaccgcagccggcgccgacggcgacgacaccacccggtccgccggtggccgaagc
ccacggttcgagggcgacgacgccacccggtccgccggtggccgaagcccacggtccgag
ggcgacgatgccacccggtccgccggtggccgaaccccacggtccgacggcgacgccgcc
ccggccggcgacgccccacccgcggcgcgcccgaggatcggcgacacccgccccgccccg
cccgccgccggcggcgacggggcccccgtcgcggccaaggccgagggcgagggcggctcc
gcgggcgggcgcaagcgtcggcgccgcggcggccgtggtcgcggcaagggcggtggccag
ggcggcggtcagggcgagcagaacggtggcggcgatcgcagcggcggccgcgggggccag
ggtggcggccagcagggtcgtggcgggggccagggcggccagcagggccgcgggggccag
ggtcgcggcggccggggcgacgggcgaggcggccagcgttcggtccagccggtcaccgcg
ctcaccggcgaggcggtcgagctcgacgacgacgtgctcgccgcccgtcgaggacgcgag
cgcaagggcaaggcggtcgggcgctacctgatggccgtccacgtccagcccgaggcgacc
cagatcgccatcctcgagggccgctcgctcatcgagcaccaggtctcgcgaccggccgac
gacatcagccagatccacggcaacatctacctgggcaaggtccagaacgtgctgccgggc
atggaggcggccttcgtcgacatcggcacgcccaagaacgccgtcctctaccgcagcgac
gcccgggccgacgacgacctcgaccagcccaagcagcgctcgaacgccaagatcgaggac
atgctgcgggccaagcagctgatcctctgccaggtcaccaagaaccccatcgcccacaag
ggcgcccgcctgacccaggaggtctcgctgccgggccggttcgtggtgctggtgcccaac
agcacgacctacggcatctccaagcgactccccgacgacgagcgcaagcggctgcggaac
atcctcgacaaggtccggcccaagggccacggcctcatcgtccgcaccgccgccgagggg
gtgaccgcgtcggagatcgaggccgacgtcacccgcctggccagccagtggcagcagatc
gaggccctcgccgagcgggcccggagccagggcccgaccctgctctaccgggagccggac
acggccatccgcatgatccgcgaggagctcaccaacgacttccgcaaggtcgtcatcgac
gatcgccacctgttcgagcaggtcagcgactacgtcagcagcatctcgcccgagatggcc
gagcgggtcgagctctacgacccggccaccgaaccgctgcccctcttcgagaagcaccac
atccacgagcagctgcacaaggccctcgaccgcaaggtgtggctgccctcgggcgggtcg
ctgatcatcgagcacaccgaggcgctgaccgtcatcgacgtcaacacgggcaagaacgtg
ggcacgtcgagcctcgagcagacggtgtacctcaacaacctggaggcggccgaggaggtc
gcccgccagctccggctgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatg
gagatcgccaagaaccgcgacgacgtcatcaagaccttccgcgacgccctggcccgggac
aagacccgcacccaggtcttcgacatctcccagctgggcctggtcgagatgacccgcaag
cggatcggcgaggggctcctcgagtccttcgcccagggctgcccccactgcgaggggcgc
ggcgtcgtcctcgacacctccctcctccccaagggctga
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