Iamia sp. SCSIO 61187: HC251_10100
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Entry
HC251_10100 CDS
T07394
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
iam
Iamia sp. SCSIO 61187
Pathway
iam02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
iam00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HC251_10100 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iam03021
]
HC251_10100 (rpoD)
Transcription machinery [BR:
iam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HC251_10100 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_3
HTH_10
Exonuc_VII_L
HTH_24
HTH_AsnC-type
CENP-B_N
HTH_Tnp_ISL3
HTH_5
Motif
Other DBs
NCBI-ProteinID:
QYG92746
LinkDB
All DBs
Position
2102514..2103683
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AA seq
389 aa
AA seq
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MTGATGAVPPDVAPDVEPEAPDEAAPAPIAAAPDLMAPEAVASRPALDARVIDARPRPNV
HPGTGKRPAVRAPTTDRGSGSADSVRIYLREIGRVPLLTGPQEVDLAQRIERGAEAALRL
ADLAAADGLDALGFAERRRLERQCRDGEEAKSQLIQANLRLVVSVAKRYVGRGMQLLDLI
QEGNLGLMRAVEKFDWTKGFKFSTYATWWIRQAITRAIADQSRTIRIPVHMVESINKVHR
IQRQMLQELERDPTVEELAAKVDMSPSRVREILRIAQDPLSLDSPVGEADDSNLSDFIED
LQAEAPADAAARTMLVDAVVEAMSELNEREQQVVRLRFGLEDGQSRTLEEVGKEFGVTRE
RIRQIESKTLAKLRHPHRSQKLRDYLEAD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaccggagccacgggggccgtgccccctgatgtcgctcccgatgtggagccagaggca
ccggacgaggccgccccggcaccgatcgcagccgcccccgacctgatggcccccgaggcg
gtcgcctcccgacccgccctcgacgcccgggtcatcgatgcccggccccggccgaacgtg
caccccggaaccgggaagcgcccggcggtgcgggcgccgaccaccgaccgggggagcggg
tcggccgactcggtgcgcatctacctgcgcgagatcggccgggtgccgctgctcaccggg
ccccaggaggtcgacctggcccagcgcatcgagcgcggcgccgaggccgccctccggctc
gccgacctggccgcggccgacggcctcgacgccctcgggttcgccgagcgccgccgtctc
gagcgccagtgccgcgacggcgaggaggccaagtcccagctgatccaggccaacctgcgc
ctcgtcgtctcggtggccaagcggtacgtgggccggggcatgcagctcctcgacctcatc
caggagggcaacctcgggctgatgcgggcggtcgagaagttcgactggaccaagggcttc
aagttctcgacctacgccacctggtggatccgccaggccatcacccgggccatcgcggac
cagtcccgcaccatccgcatcccggtgcacatggtcgagtcgatcaacaaggtgcaccgc
atccagcgccagatgctccaggagctcgagcgcgaccccaccgtcgaagagctggcggcc
aaggtcgacatgtcgccgtcgcgggtgcgcgagatcctccgcatcgcccaggacccgctg
tcgctcgactcgcccgtgggcgaggccgacgactcgaacctgtcggacttcatcgaggac
ctccaggccgaggccccggccgacgccgccgcccgcacgatgctcgtcgatgccgtggtc
gaggccatgagcgagctcaacgagcgcgagcagcaggtggtgcggctccgcttcggtctc
gaggacgggcagtcccggacgctcgaggaggtgggcaaggagttcggtgtgacccgcgag
cggatccgccagatcgagtccaagacgctcgccaagctccgccacccgcaccgcagccag
aagctgcgggactacctcgaggccgactga
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