Intestinibacter bartlettii: NQ514_00220
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Entry
NQ514_00220 CDS
T08452
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ibr
Intestinibacter bartlettii
Pathway
ibr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ibr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQ514_00220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ibr03400
]
NQ514_00220 (mfd)
Enzymes [BR:
ibr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQ514_00220 (mfd)
DNA repair and recombination proteins [BR:
ibr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQ514_00220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UWO81034
LinkDB
All DBs
Position
complement(38966..42361)
Genome browser
AA seq
1131 aa
AA seq
DB search
MEDVFVYPLKNSNEYKEIINSICERKGALQLNGLLDMQKPHITYSIFKELARPTLFIANS
DLEAKKVYNELRFYTKDKVEYLGTDEIYFYHLDAKDRSEEAKKLRVLLKLAKKQKTIVVT
SVDAILRKYIPKKVLLDNIFTYKIGDIINLEELSQNLVRLGYERVSRIEGLGQFSIRGGI
IDVYSLEYTNPIRIELFDDEIDSIRTFDVFSQKSIDKIKKVVITPSREFIYPEDTTSAVE
KIKEETNKYTDDDVLKNIENISDRTYFQGVENYIDYLYDDQNKSIFSYLPDNGIVVMSDI
SRLKERCENYLNEFKDNYNLNLERGLAIKNQGNLIYSYEELPYILEDKKLIINSLLAKPI
NGFSVNNVIDFNSREIPAYNSKLDTLVEDLNRFKYNGYKIILAVNSSDRCKKLQKDLLDL
GLEVGISKSRNTEIKSSQIIIVPANISKGFEYKSIKFQVITDTEIIGVNKRVSKKTKNKK
NKDGKKIESFLDLKIGDYVVHENSGIGRYTGIEQISVNGIKKDYLKIIYQGGDNLYVPID
QMDKVQKYIGSDAEKVKLNKLGTNEWTKAKAKVKREIEDMTKDLVELYAKREQIKGYKFS
KDTVWQKEFESMFPYEETEDQLKAIKETKKDMESSKVMDRLICGDVGYGKTEVAIRAAFK
ACMDQKQVAILVPTTILAQQHYNTFKQRFANYPIRVEVLSRFKTAKQQREIINDARKGLV
DILIGTHRIISDDINLPNLGLVVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLH
MSLSGIRDMSVIEEPPQERHPVITYVAEAKESIIQDEIEREIARGGQVFFVYNRVEHIEE
MASMVQRLVPEAKVAVAHGRMTSKTLENIILGFLNKEYDVLVCTTIVETGMDISNANTMI
IYDADKMGLAQLYQLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIREFTEFGSGFK
IAMRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNEAIKKVKGEDIEEEIDVEINLAVN
AYIPNSYIPEELDKIEMYKKIASIENKDDMKEVTEELIDRFSDVPRSVQTLLSIAYIKSM
CKKLKIEKVTQNKNEISLVPLTRYKTKEKIGYKIVNELVDLLEKMCDLNKK
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtttttgtataccctttgaaaaactcaaatgagtataaggaaattataaat
tcgatatgcgaaagaaaaggagccttacaattaaatggccttttagatatgcaaaaacca
catataacttattctatatttaaagaattggctagaccgactttgtttattgcaaatagt
gatttggaggcaaagaaggtctacaatgaacttcgtttttatactaaggataaggtggaa
tatctaggtactgatgaaatttatttttatcacctagatgcaaaagacagaagtgaagag
gcgaaaaaactaagggttttattaaaattagctaaaaagcaaaaaactatagtagttacg
tcagttgatgcaatactaagaaaatatatacctaaaaaggtattattagataatatattt
acttataaaattggagatattattaatttagaggaattgagccaaaacttagtcagacta
gggtatgaaagagtgtctagaatagaaggattaggtcaatttagtattagaggtggaata
atagatgtatattctctagaatatacaaaccctatccgtatagaattatttgatgatgaa
atagattctatacgtacttttgatgttttctcacaaaaatcaatagataaaattaagaaa
gtagtaataacaccgtctcgtgaatttatttatccagaggatactacatcagctgttgaa
aaaataaaagaagaaacaaataaatatactgatgatgatgttttgaaaaatatagaaaat
atatctgatagaacttacttccaaggtgtagaaaattatatagattatctttatgatgac
caaaataaaagtatatttagttatttacctgataacggaatagtggttatgagtgatatt
tctagacttaaggaaagatgtgaaaactacttaaacgaatttaaagataattataattta
aatcttgagagaggtttagcaattaaaaaccaaggtaatttaatttactcatatgaagaa
ttaccttatatattagaagataaaaaattaattataaattcgctattagcaaagccaata
aacggattttcagttaataatgtaatcgattttaattcgagagaaatacctgcatataat
tcaaaattagatacattggtagaagatttaaatagatttaaatacaatggatataaaata
atattagctgtaaactcatcggatagatgcaaaaaattacaaaaagatttacttgattta
ggtttagaagttggtatatcaaagagtcgtaatacagaaattaaatcttcgcaaataatt
attgtaccagctaatataagtaaaggttttgaatataaatctataaaattccaggttata
actgatactgagataatcggtgtaaataagagagtttctaaaaaaactaagaataaaaag
aataaggatggcaaaaaaattgagtcattcttagatttgaaaataggagattatgtagtt
cacgaaaatagcggtataggtagatatactggcattgaacaaatttcagtaaatggtatt
aagaaggactacttaaaaataatttaccaaggtggagacaatttatatgtacctatagac
caaatggataaggtacaaaaatatataggttcagatgccgaaaaggtgaagttaaataaa
cttggaacaaatgaatggactaaagcaaaggccaaagttaaacgagaaatagaggatatg
acaaaggacttagttgaactttatgcaaaaagagagcaaatcaaagggtataaattctct
aaagatactgtttggcaaaaagaatttgaatctatgtttccgtatgaagaaactgaagac
cagctaaaagcaatcaaagaaactaaaaaggatatggaatcttccaaggtaatggatagg
cttatatgtggtgacgttggatatggtaaaacagaagttgctataagggctgcatttaag
gcttgtatggatcaaaaacaagtagcaatactagttccaacaactatattagcacaacaa
cattacaatacatttaagcaaagatttgcaaattatcctattagggtagaagttttaagc
agatttaaaactgctaaacaacaaagagaaataatcaatgacgctagaaaaggtttagtt
gatattcttatcggtacacacagaataatctcagatgatattaatctacctaatttaggt
ctagttgtaattgatgaggaacagagatttggtgttaagcacaaagaatcacttaagaaa
ataaaaaatacagtagatgtattaactttatcagcaaccccaattccaagaactttacat
atgtcactgagtgggattagggatatgagtgttatagaagaaccaccacaagaaagacat
ccagtaataacttatgttgcagaagcaaaggaaagtattattcaggatgaaattgaaaga
gaaatagcaagaggaggtcaggttttcttcgtttataatcgagtggaacatattgaagaa
atggcaagtatggttcaacgattagtacctgaggcaaaagttgctgttgctcatggtaga
atgacttctaaaactctagaaaatattatattaggattcttaaataaagaatacgatgtt
ttagtttgtacaacaatagttgaaacaggaatggacatatctaatgcaaacacaatgatt
atatatgatgcagataagatggggcttgctcaactttatcagttaagaggtagagttgga
agaagctctagacaaggttatgcatatttaatgtatgaaaaagacaaagtattaagtgaa
gtagctgaaaaaagactgaaagcaattagggagtttacagaatttggttcagggtttaaa
atagctatgagggacttagaaataagaggtgcaggtaatatattaggttcacagcaacat
ggtcatatggctgttatagggtatgatttatatgttaaaatgttaaatgaagctataaag
aaagttaaaggcgaagatatcgaagaagaaatcgatgtagaaattaatttagctgttaat
gcatatattccaaattcttatataccagaagaacttgataaaattgagatgtataagaaa
atagcatctatagaaaataaggatgatatgaaagaagtcacagaagaattaatagataga
ttttctgatgtgccaagatctgtccaaactttactttcaatagcatatattaaatctatg
tgtaaaaagctgaagatagaaaaagtcactcaaaacaaaaatgaaattagtttagtacct
ttaacaagatacaaaactaaagaaaagataggttacaagatagtaaatgagttagtagat
ttactagaaaaaatgtgtgacctaaacaaaaaataa
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