Intestinibacter bartlettii: NQ514_03745
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Entry
NQ514_03745 CDS
T08452
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ibr
Intestinibacter bartlettii
Pathway
ibr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ibr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ514_03745 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ibr03019
]
NQ514_03745 (rnr)
03016 Transfer RNA biogenesis [BR:
ibr03016
]
NQ514_03745 (rnr)
Enzymes [BR:
ibr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NQ514_03745 (rnr)
Messenger RNA biogenesis [BR:
ibr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ514_03745 (rnr)
Transfer RNA biogenesis [BR:
ibr03016
]
Prokaryotic type
tRNA degradation factors
NQ514_03745 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1CSD-TOTE-2
OB_HELZ2
CSD
MFS_5
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UWO81604
LinkDB
All DBs
Position
745956..748154
Genome browser
AA seq
732 aa
AA seq
DB search
MTPEIKEKLLGLINEKAYNPLKKEELALIFDIHSCEMPMFNNFLEELQDEGYLIVSKKGR
VMAPSAMGYFVGKFISHRKGFGFVESDEEFTQDLFIGSDDINGAMNGDRVMAEIVKPAEE
GRRAEGAIVKVLKRENETVIGLFQLSNKNFGFVVPDDKKFTQDIYIPSRYFSGAKDNDKV
VCKITVWPTEGRKPEGKITEVIGQKGERGVEIDSIIRAHGLPEEFPHKVLEEADRVIVPI
PEEEIKRRMDLRDLKTFTIDGEDAKDLDDAVSIEVLENGNYKLGVHIADVSHYVREHSKL
DKEAIKRATSVYLVDKVIPMLPKQLSNGVCSLNPFEDKLTLSVFMEINADGKVIKYDIAE
SIINSKARMTYTEVSDILEKDDEKLKSTFSNLVEEFHNAEDLARILMKRRERRGSIDFDF
PESKIILNSEGKVADIKSYERRISNRMIEEFMLVTNETVAEHFFWLQTPFVYRIHEIPAA
EKMENLSKFIATFGYSLKGDLEQIHPKEIQRVLKLIKGTPEEESISTIMLRSMRQARYAP
QCVGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEQLNGKLTPKRSEQLANIVEYASNQSS
EQEREAELAERDVHDYYKAVYMADRIGQEFDGTISSVTSFGMFVELENTVEGLIRMVDMT
DDYYNYIESSYSLVGERTKRVFRIGDQVRIKVSKVNVDFREIDFELVSVKEDNRLVNKAV
DGEVEADEKDGE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggaaataaaagaaaagttactaggtttaataaatgaaaaagcatataatcct
ctaaagaaggaagaattagcattaatatttgacatacattcatgtgaaatgccaatgttc
aacaattttttagaagaattacaagatgagggatatttaatagtatctaaaaaaggaaga
gttatggcgccaagtgctatgggatattttgtcggaaaatttatatctcatagaaaagga
tttggatttgtagaatcagacgaagaatttacacaagatttattcataggttcagatgac
ataaatggagcgatgaacggcgacagagttatggctgaaatagtaaagccagcagaagaa
ggaagaagagccgaaggagctatcgttaaagtattaaaaagagaaaacgaaactgttata
ggtcttttccaattatcaaacaaaaactttggatttgttgtaccagatgataagaaattc
actcaagatatctacattccaagcagatatttctctggagcaaaagacaacgacaaagta
gtttgtaaaatcacagtttggccaactgaaggaagaaaaccagaaggtaaaataacagaa
gttataggtcaaaaaggtgaacgtggggtagaaatcgactcaataataagagcacatgga
ctaccagaagagttcccacacaaagtattagaagaagctgacagagttatagttccaata
ccagaagaagaaataaaaagaagaatggatttaagagatttaaaaacattcacaatagat
ggtgaagatgcaaaagacttagacgatgcagtttcaatcgaagtattagaaaacggaaac
tacaaactaggtgttcatatcgccgatgtttctcactatgttagagaacattcaaaacta
gataaagaagctataaaaagagcaacttcagtttatctagttgataaagtaataccaatg
cttccaaaacaactttcaaacggagtatgtagtttaaatccatttgaagataaattaact
ttatcagtatttatggaaataaacgctgacggaaaagttataaaatacgacatagcagag
tcaatcataaactcaaaagctagaatgacttatacagaagtatctgacatattagaaaaa
gacgatgaaaaattaaaatctactttctctaacttagtagaagaattccataatgctgaa
gacttagcgagaattcttatgaaaagaagagagagaagaggatcaatcgactttgatttc
cctgaatcaaaaataatattaaattcagaaggaaaagtagcagatatcaagtcatatgaa
agaagaatatcaaacagaatgatagaagagttcatgcttgtgacaaatgaaacagtagca
gaacatttcttctggttacaaactccattcgtttacagaatacatgagattcctgcagca
gaaaaaatggagaacttaagcaaatttatagctacatttggatatagcttaaaaggtgac
ttagaacaaattcatccaaaagaaatccaaagagttctaaaattaataaaaggaacacca
gaagaagaatcaataagtacaataatgcttagaagtatgagacaagcgagatatgctcca
caatgtgtgggtcacttcggtttagcggcacaatactactgccactttacatcaccaata
agaagatacccagacttacaaatacacagaataataaaagaacaactaaacggaaaatta
actccaaagagaagtgaacaacttgcaaacatagttgaatatgcatctaaccaatcttca
gaacaagaaagagaagctgaattagcagaaagagatgtacacgattactataaagctgtt
tatatggcagacagaattggtcaagaattcgacggaacaatatcaagtgttacatcattc
ggtatgttcgttgaattagaaaacacagtagaaggattaatcagaatggtcgacatgact
gacgattattacaactacatcgaaagcagctattcattagttggtgaaagaactaagaga
gtattcagaataggtgaccaagttagaatcaaagttagcaaagtaaatgtagactttaga
gaaatcgactttgaattagtttctgttaaagaagataacagattagtaaataaggctgtt
gacggtgaagtagaagctgacgaaaaagatggagaataa
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