Intestinibacter bartlettii: NQ514_05230
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Entry
NQ514_05230 CDS
T08452
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ibr
Intestinibacter bartlettii
Pathway
ibr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ibr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ514_05230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ibr03019
]
NQ514_05230
Messenger RNA biogenesis [BR:
ibr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ514_05230
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
ODP
Motif
Other DBs
NCBI-ProteinID:
UWO81891
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Position
1081173..1082828
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AA seq
551 aa
AA seq
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MKSSLKIIPLGGLGEIGKNITAIEYEDEIIVIDCGVSFPDDDMLGIDLVIPDINYLLENQ
DKVKGLFITHGHEDHIGSIPYILKQLNMDIYATRLTIGLIASKLEEHNISKESLIPVKEG
DVIKFNKLSVEFIRATHSIADACSLAIFTPLGTIVHTGDFKIDYTPIDGRVMDLNRLSAL
GEEGVLLLMADSTNVERSGHSLSEKTIGETLNRILDGATGRVIVATFASNIHRMQQIVDA
SLKESRKICFSGRSMENVSKVAMELGYLHIPEEAVISVDELNNHDNNKITIITTGSQGEP
MAGLSRIAYGNHRKIKLERDDLFIISASPIPGNDKMISKVINQLYKKGAEVIYEDLEDVH
VSGHAYQEELKLIHSITKPKYFLPVHGEYRHLKHHADLAKKMGMKGENIFTMENGDVLEI
SEEGAKISGKIRTGVLYVDGIGVGDVGNIVLRDRRNLARDGMVIIVFAIDMENFYLASGP
DVITRGFIYARENEDIINEIKEVSRQKIEECLLEQSTGWQVLKGSVRKSVEVLLFEKTKR
KPSVFPIIMDV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagttcattaaaaataattcctctaggaggattaggtgaaatagggaaaaatata
actgcgatagaatatgaagatgaaataattgtgatagattgcggagtatcttttccagat
gatgacatgcttggaatagacttagtcattccagatataaattatttattagaaaatcaa
gataaagtaaaaggtttatttataacacatggtcatgaagatcatataggttcaatccca
tatatattaaaacaactcaatatggatatatatgcaacacgtcttacaatcggacttata
gcgagcaaattagaggagcacaatataagtaaagaaagtttaatacccgtaaaagaaggt
gatgtgataaaatttaataaactgagtgtagaatttataagggcaactcacagtatagca
gatgcatgttcattggcgatttttactccacttggaacaattgttcatactggcgatttt
aaaatagactatactccaattgacggaagagttatggacttaaacagattatcagctcta
ggtgaagagggagtattattgcttatggcagatagtacaaatgtagagagaagtgggcac
tcgctttctgaaaaaacaataggggaaacattaaatagaattttagatggggcgacagga
agggttatagtagctacatttgcatcgaatattcatagaatgcaacaaatagtagatgca
tcattaaaagaaagcagaaaaatttgttttagcggaagaagtatggaaaatgtaagcaag
gtagctatggagcttggttatttacatattccagaagaggctgtaataagtgtggatgaa
ttaaataatcatgataacaataaaataactataataactactggcagccaaggggaacct
atggctgggctttcaagaatagcttatggaaatcacagaaaaataaaattagaacgcgat
gatttatttataatttcagcatcacctatacctggaaatgataaaatgatatcaaaggta
ataaatcaactttataaaaagggagcagaagttatatatgaagatttagaagatgtacat
gtttctggtcatgcatatcaagaggaattaaaattaattcattctataacaaagcctaaa
tattttctaccagtccacggcgaatatcgtcatcttaaacaccatgctgatttggcaaaa
aagatgggcatgaagggcgaaaatatatttactatggaaaatggagatgtgcttgaaata
agtgaagaaggcgcaaaaatatctggaaaaatacgtacaggtgtactttatgtagatgga
ataggtgttggagatgtaggaaatatcgtattaagagatagacgtaatttagcaagggat
ggtatggtaataatagtatttgctatagatatggaaaatttctatcttgcttcggggcca
gatgttataacaagaggatttatatatgctagagaaaatgaagatataataaatgaaata
aaagaagtatcaagacaaaaaatcgaagaatgtctattagaacaatcaacaggatggcag
gtattaaagggaagtgtaagaaaatctgttgaagtactgctttttgaaaaaacaaaaaga
aaaccaagtgtatttcctattataatggatgtatag
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