Intestinibacter bartlettii: NQ514_06680
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Entry
NQ514_06680 CDS
T08452
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ibr
Intestinibacter bartlettii
Pathway
ibr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ibr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ514_06680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ibr03019
]
NQ514_06680
Messenger RNA biogenesis [BR:
ibr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ514_06680
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UWO82170
LinkDB
All DBs
Position
1396076..1397752
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AA seq
558 aa
AA seq
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MQLFKKNTNKIKVMALGGLNEIGKNMTLIEYKDEIIVIDAGLSFPEDEMLGVDIVIPDIT
YLLQNRDKVKGIFITHGHEDHIGALPYILKKLDVPVYGTMLSIGLIQVKLKEHKLSTAKL
NVITPKQIVKLSNMSVEFIKNNHSIPGACSIAVHTDQGIIYHTGDFKIDLTPIDGDVMDL
HRICELGQEGVLLLLADSTNVEKPGYTMSEKTVGAGLDDLFRTAGNSRIIVATFSSNIHR
LQQIIDMAKKCNRKVAISGRSMVNVIGVARELGYLDIEDDMLVDLNDISKYDDSELVIIT
TGTQGEPMSALARMASSEHKKVEIRPGDLVIISAHPIPGNEKLISKVINLLFEKGARVVY
NDLADIHVSGHASQEELKLINRMANPKFFMPVHGEYRMLKRHSELAQELGMPAENIFVMQ
TGQVLELDKNSAKVTTTVPIGNVLVDGLGVGDVGNIVLRDRKHLSEDGLMIVVVTISKED
GKVLAGPDIISRGFVYVRESEDLMDGAKTVIKEVLNECEEKNIKEWAYLKNNIKENLKEY
LYTKTKRNPMILPIIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgtttaagaaaaacaccaacaagataaaggtgatggctttaggtggtcttaac
gagataggaaaaaacatgactttaatcgaatacaaagacgagataattgtaatagatgca
ggtcttagtttccctgaagatgaaatgttaggggtagatatcgttatacctgacatcact
tatttacttcagaaccgcgacaaagtaaaaggaatttttataacacacggacatgaggat
catataggagctcttccttacatccttaaaaaattagatgtacccgtatatgggactatg
cttagtataggattaatacaagttaaattaaaagagcataaattaagtactgcgaaatta
aatgtaattactcctaaacaaattgtaaaactttcaaatatgagcgtagagtttattaaa
aataatcatagtattccaggtgcatgttctatagcggttcacacagaccaaggtattata
taccacacaggggattttaaaatagacttaactccaatagatggcgatgttatggattta
cacagaatatgtgaattaggtcaagaaggagtacttctattattagcagatagtactaac
gttgaaaagcctggatacacaatgtcagaaaagacagtaggtgctggtttagacgattta
tttagaacagctggaaatagtagaattatagtggcaacattctcttcaaatatacatagg
ctacaacaaataatagatatggctaaaaaatgcaatagaaaagtagctatatcaggtaga
tctatggtaaatgtaataggtgttgcaagagaacttggatatttagatatagaagatgat
atgttagttgacttaaatgacatatctaaatacgatgatagtgaacttgtaattataact
acaggaactcaaggtgaaccaatgtcagcacttgctagaatggctagtagcgaacataaa
aaagttgagattagacctggagatttagttataatatcagctcatccaataccaggaaat
gaaaaattaatttcaaaagtaataaacttattatttgaaaaaggtgcaagagttgtatac
aacgacttagctgatatacacgtttcaggccatgcatctcaagaagagttgaaattaata
aatagaatggcaaacccaaaattctttatgccagtacacggtgagtacagaatgttaaaa
agacattcagaacttgctcaagaattaggaatgccagcagaaaatatatttgttatgcaa
acagggcaagtattagaattagataaaaattctgcaaaagttactactacagttccaata
ggaaatgtattagttgatggattaggtgttggagatgtaggaaatatagttttaagagat
agaaaacacttatcagaagatggtctaatgatagtagttgtaactatttcaaaagaagac
ggaaaagttttagcaggccctgatattatatcaagaggatttgtatatgtaagagagtca
gaagacttaatggacggtgcaaaaactgtaataaaagaagttctaaacgaatgtgaagaa
aaaaatataaaagaatgggcttatttaaaaaataatataaaagaaaatcttaaagaatat
ctgtacacaaaaactaagagaaatccaatgatattacctatcataatggaagtataa
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