Intestinimonas butyriciproducens: IB211_00238
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Entry
IB211_00238 CDS
T04182
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ibu
Intestinimonas butyriciproducens
Pathway
ibu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ibu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IB211_00238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ibu03019
]
IB211_00238
03009 Ribosome biogenesis [BR:
ibu03009
]
IB211_00238
Enzymes [BR:
ibu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IB211_00238
Messenger RNA biogenesis [BR:
ibu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IB211_00238
Ribosome biogenesis [BR:
ibu03009
]
Prokaryotic type
rRNA helicases
IB211_00238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALP92634
UniProt:
A0A0S2VZY3
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All DBs
Position
246745..247923
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AA seq
392 aa
AA seq
DB search
MEINGEEVNEIVRYDELKLSPEIMRALEKKGYVQATPVQGGAIPYFMEWRDVIAKAPTGT
GKTFAFGIPMVEHIDPREDAVQGLVLAPTRELAIQIMAELRDLCEFKEGVRAVVLYGGQP
IDKQITQLKKRPQIVVATPGRLMDHMKRRTVRLDRVQTVVLDEADRMLDMGFIHDVTRIL
DAIKSRKNLGMFSATISREVMDISWVYQRDPVEITVRADEQNKPDIQQYRIEVERGDKTE
ITARLLEAGSYERAIAFCNTKNMTDRLSGLLKMRGFSAEAIHGDIQQSVREKTLNRFRRG
ELRVLVATDVAARGLDIDDVDVVFNYDVPDENEYYVHRIGRTGRAKRHGVAYTLVSTITE
SMRMDDIEKATKNKVHRLKYEKGTLLDLEEGK
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaacggcgaagaggtcaacgagattgtacgctacgacgagctgaagctgtcc
cccgagatcatgcgggccctggagaaaaagggctatgtccaggccacccccgttcagggc
ggggccatcccctattttatggaatggcgggacgtgatcgccaaggcccccaccggcacc
ggcaagacctttgccttcggcatccctatggtagagcacatcgacccccgggaggacgcg
gtacagggtctggtcctggcccccacccgggagctggccatccagatcatggccgagctg
cgggatctgtgtgaattcaaggagggggtgcgcgccgtggtgctctacggcggccagccc
atcgacaagcagatcacccaattgaagaagcggccccagatcgtggtagccacgcccggc
cgcctgatggaccatatgaagcggcgcaccgtgcggctggacagggtccagaccgtggtg
ctggacgaggcggaccggatgctggacatgggctttattcacgacgtgacccggattctg
gacgccatcaagtccaggaagaacctgggcatgttctccgccaccatctcccgggaggtc
atggacatctcctgggtgtaccagcgggacccggtggagatcaccgtccgggccgacgag
cagaacaagccggacatccagcaataccgcatcgaggtggagcggggggacaagaccgag
atcaccgcccgcctgctggaggccggcagctatgagcgggccatcgccttctgcaacacc
aagaacatgacggaccggctctccggccttttaaagatgcggggcttctccgccgaggcc
atccatggggacatccagcagtccgtgcgggaaaagacgctcaaccgctttcgcagaggg
gagctgcgggtgctggtggccaccgacgtggccgcccgcggcctggacatcgacgacgtg
gacgtggtgttcaactacgatgtgcccgatgaaaatgaatattacgtccaccgcatcggc
cgcaccggccgggccaagcgccacggcgtggcctacaccctggtgtccaccatcaccgag
agcatgcggatggacgacattgaaaaggccaccaaaaacaaggtccaccgcctcaagtat
gaaaaggggaccctgctggacctggaagagggcaaataa
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