Intestinimonas butyriciproducens: IB211_01549
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Entry
IB211_01549 CDS
T04182
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ibu
Intestinimonas butyriciproducens
Pathway
ibu03030
DNA replication
ibu03430
Mismatch repair
ibu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ibu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IB211_01549
03430 Mismatch repair
IB211_01549
03440 Homologous recombination
IB211_01549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ibu03032
]
IB211_01549
03400 DNA repair and recombination proteins [BR:
ibu03400
]
IB211_01549
Enzymes [BR:
ibu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IB211_01549
DNA replication proteins [BR:
ibu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IB211_01549
DNA repair and recombination proteins [BR:
ibu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IB211_01549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
RNase_H_2
Rubredoxin
CcmE
tRNA_anti_2
DUF6193
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
ALP93941
UniProt:
A0A0S2W3M6
LinkDB
All DBs
Position
1539192..1543367
Genome browser
AA seq
1391 aa
AA seq
DB search
MPEQEKIPLLSLFSAWVPPADLRPMLVEMLVTGAVIDKRVRSIQADLQCPVCPSDALRTR
MEQELASAYGVRSVAFRFFTPAPAQAAAEVEEAPPMPTEADMPPEPEETCPQHLDMAPED
PMEVFRRTERIRQEALRNIKPAVPSEKREKASGNKLLFGKIIKRFPCIEMKDIALDSEMV
TIEGDVFATDHVEMKKRGAWIVRFDITDRTNSIRVAKFMVGDEGKALAGALKEGQHLIVQ
GRVSPYQGELQIEPTGIAEGQRPPARQDMAEEGKRVELHLHTRMSSMDATTDIKEVIKRA
AAWGHPAIAITDHGVCHDFPTAYSTAKKAGIKMLFGVEAYFINDVDDMPTVRGTMDASFC
EEYVCFDLETTGLDARKDRITEIGAVVLKNGVVTDEVFSTFVDPERPIPYEVSQLTGITD
DMVRGAPSQSEAVRQFLKFVNGRPLAAHNAGFDVGFIAEACRRMGVSLDVTAVDTLPLAQ
ALLPQLSKHKLDVVADHLGLPSFNHHRATDDASTVAYMLVPFFKRLEEEHGIHSLDPINR
WAAERNQKRKGKRRARHLIVLARNQTGLRNLYKLVSKAHLEHFQRKQYPVMPKSLIDENR
EGLLMGSACEAGELFQAVARRSSWAELKRIASWYDYLEIQPISNNAFMLRPDKNGRTMSR
DEEELRDFNRTIVELAHEMGKPVVATGDVHFLDPEDEIYRHILLNTKGFEDADAPNPLYF
RTTDEMLREFSYLGEETAREVVIDNTHLIAAWCGDLNPLPNGLFAPKLEDSEGELKRLVW
GKAKRLYGESPPQIVVDRIETELHDILMRHYDVIYMSAQKLVQDSLDHGYLVGSRGSVGS
SIVAFMSGITEVNALPPHYRCPNCKHADFEAAKEGGWGCGADMPDAVCPVCGAKYEKDGF
NIPFETFLGFGGDKVPDIDLNFSGEYQSSAHRHTFELFGESHVFRAGTIGTVAEKTAFGY
VKKYMEERGKTATKAEMLRLAKGCTGVKRTTGQHPGGMVVIPQDKEIYDFCPVQHPADDT
DTDIITTHFEYHSMESNLLKLDMLGHDDPSMIRMMEDLTGVDAKTIPLDDPGTRSIFITS
EVLGYQDDPVLGPTGATAIPEFGTSFVRGMLEETKPEEFDILVRLSGFSHGTDVWLGNAR
DLILSGTATVGQAIGCRDDIMIYLISCGMPEKRAFKIMEAVRKGRGLPEGAEEEMKAAGV
PDWYIGSCKKIAYLFPKAHAVAYVMMAFRIAWFKVHEPLAFYAAYFSIRAKAFDATVMCM
GLDRAKAKMAEIRAKDKEATAVEQDMLTTLEVVYEFYIRGFTFDQMDLYRSDAVRFGVDK
EHGALIPPFMAIPGLGETAALSIVEQRKGKQYLSIEEFSVDCPKVTKSHIELLKNCGALA
GMPDTSQMTLF
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcaagagaaaattccactgttgagcctattttccgcctgggtcccgccggct
gatctgcggcccatgctggtagaaatgctggtgactggggcggtgatcgacaagcgggtg
cggagtatccaggccgacctccaatgcccggtctgcccaagcgatgcgctccggaccaga
atggagcaggaactggcatcggcctacggcgtacgcagcgtggcgtttcgattcttcaca
ccagctcccgcacaagcggcagcagaggtggaggaggcgcctcctatgccgacggaggca
gatatgccgccggaaccggaggagacatgccctcagcacttggacatggcgccggaagac
cctatggaggtattccggcgcaccgaacgcatccggcaagaggcgctgaggaacatcaag
ccggcggtgccatctgaaaaacgggaaaaggccagcgggaacaagctcctctttggaaag
atcatcaaaagatttccctgtattgaaatgaaagacatcgccttggactctgaaatggtc
accatcgagggggacgtttttgcgaccgaccatgtggagatgaagaagcggggcgcctgg
attgttcgttttgatatcacagaccgcaccaattctattcgggtggcgaagttcatggtg
ggagacgaggggaaggccctggccggggcgttgaaggaggggcagcacctgatcgtgcag
gggagggtaagcccctatcagggggagctccagatcgagcccaccggcattgccgaagga
caaaggccgccggcccggcaggacatggcggaggaggggaagcgggtggaactccatctt
cacacccgtatgtcctccatggacgccacaacggatatcaaggaggtcatcaagcgggcg
gcagcttggggacatccggccatcgccatcacggaccacggtgtctgccacgattttccc
acggcctattccacggccaaaaaggccggcattaagatgctctttggggtggaggcctat
tttatcaatgacgtagatgatatgcccactgtgcgcgggacgatggatgcttccttctgc
gaggaatatgtctgctttgatttggagacgacggggctggatgctagaaaggataggatc
accgagatcggtgctgtggtcctgaaaaacggtgtggtcaccgatgaggtcttctccact
tttgtggacccggagcggcccattccctatgaggtgtcccagctcaccggaatcaccgac
gatatggtgcggggggcgccgtcacagtctgaagccgtacggcagtttctgaaattcgtc
aacggacggcctttggcggcccacaatgccggctttgatgtgggattcatcgccgaggca
tgccgccggatgggggtctctctggatgtgacggcggtggataccctgcctctggcccag
gcgttgctgccacagctctccaagcataagctggatgtagttgccgaccatcttgggctt
ccgtccttcaaccaccatcgggccaccgatgacgcttccacggtggcatacatgctggtg
cccttctttaaacgtctggaggaggagcacggtattcattcactggatcccatcaaccgt
tgggcggcagagcggaatcagaaacgaaagggaaagcgccgggcccggcatctcattgtc
ctggcccgaaatcagaccggtttgcgcaatctctataagctggtatccaaagcccatctg
gaacactttcaacgcaaacagtacccagtgatgcccaaaagcctcatcgacgagaaccga
gagggacttcttatgggctctgcctgcgaggcaggggagctcttccaggcggtggcccgc
cgttcctcctgggcggagctcaaacggattgcctcctggtatgattacctggagatccaa
cccatcagcaacaacgcctttatgctgcgcccggacaagaacggacggaccatgtcgcgg
gacgaggaggagttgagagactttaaccgaaccatcgtagagctcgcccatgagatgggc
aagccggtggtggccactggagatgtccacttcctggacccagaggatgagatttaccgc
catatcctcttgaacacgaagggattcgaggatgcggatgcgcccaatcccctttatttc
cgtaccacggatgaaatgctgcgggaattctcttatctgggggaggagaccgcccgggag
gtggtcatcgacaacacacatctgatcgcagcctggtgcggggacctgaacccgctgcca
aatgggctctttgcccctaaactggaggactccgagggagaacttaagcgtctggtatgg
gggaaagcaaagcgcctttacggagagagccctcctcagattgtggtggaccgtattgag
acggagctccatgatattctcatgcggcactatgatgtgatttatatgtctgcccagaag
ctggtgcaggattctctggaccacggctacttggtgggttcccgtgggtccgtgggctcg
tccatcgtggcttttatgtccgggatcacggaggtcaacgccctgccgccgcactatcgc
tgccccaactgtaaacatgctgatttcgaggcggccaaggaggggggctggggctgcggg
gcggatatgcccgatgcggtgtgtccggtctgcggagccaaatatgagaaggatgggttc
aacatccccttcgaaacctttttgggctttggcggtgataaggtacccgatatcgacctg
aacttctccggcgaatatcagtccagcgcccatcgccatacctttgaactgtttggcgag
tcccacgtatttcgggcggggaccatcggcaccgttgcggaaaagacggctttcggctac
gtaaagaagtatatggaggagcgaggaaagaccgctaccaaagcggagatgctgcggctg
gccaagggctgtaccggcgtcaagcggaccaccggacagcacccaggcggtatggtggtc
attcctcaggacaaggagatttacgacttctgtcccgtccagcatcccgcggacgacacc
gacaccgatatcatcacgacccatttcgaatatcactctatggagtccaaccttttgaaa
ctggacatgctgggacacgatgacccgtccatgattcgtatgatggaggacctgacgggg
gtggacgccaagacgattcccctggacgacccgggtacacggtctattttcatcacctca
gaggtgctgggctaccaggatgaccctgttttgggacccaccggggccaccgctatcccg
gaattcggcacctcgtttgtccggggtatgctggaggagaccaagccggaggagttcgat
atcctggtgcgtctgtccgggttctcccatggaaccgacgtctggcttggcaatgcaagg
gacctcattctctccggtaccgctaccgttggacaggcaatcggctgccgcgatgatatt
atgatctatctgatctcctgcggaatgccggagaaacgggcctttaagatcatggaggct
gtgcgaaagggcagggggcttccggaaggggcggaggaggagatgaaggcggccggcgtg
ccggactggtacattggctcctgcaagaaaatcgcctatctgttccccaaggcccatgca
gtggcctacgttatgatggcctttcgtatcgcctggttcaaagtccacgagcctttggcc
ttttatgcggcgtatttttccatccgtgccaaagcattcgatgcgactgtcatgtgcatg
gggctcgatcgcgccaaggccaaaatggctgagatccgtgccaaagacaaagaagccacc
gctgtagagcaggatatgctcaccactttggaggtggtatacgaattttatatccggggc
tttacgttcgaccagatggacctctaccgttctgatgcggtgcgctttggggtggataag
gagcatggggcgctgattccgccctttatggcgatcccaggcttgggagagaccgccgcc
ctctcgattgtagaacagcggaaagggaaacagtatctctccatcgaggagttttctgtt
gactgtcccaaggtgaccaagtcccacattgagcttttaaaaaactgtggggcactggcc
gggatgccggataccagtcaaatgaccctgttttaa
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