Intrasporangium calvum: Intca_0130
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Entry
Intca_0130 CDS
T01385
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ica
Intrasporangium calvum
Pathway
ica03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Intca_0130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ica03400
]
Intca_0130
Enzymes [BR:
ica01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Intca_0130
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Intca_0130
DNA repair and recombination proteins [BR:
ica03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Intca_0130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
DUF7573
DUF7129
Motif
Other DBs
NCBI-ProteinID:
ADU46691
UniProt:
E6SFF3
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All DBs
Position
138440..139300
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AA seq
286 aa
AA seq
DB search
MPELPEVQALVDFLAERTAGLAVTKVELASISALKTFNPPPQSLEGAPIDGVHRHGKFLD
IDCDGTHLVFHLARAGWLRWSDQLPTTVLRPGKSPIALRVRLSDGSGFDLTEAGTKKSLA
AYIVRDPKEVPGVARLGPDPLADDFTLERFRELLTGRRTQIKGLLRDQEVIAGVGNAYSD
EILHVAKVSPFAIAGSLPPDVVDRLYAALRETLSSAVHAASGKPAKELKDAKRAGMRVHA
RTGQACPECGDVVREVSFADTSLQYCATCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcccgaggtgcaggcgctcgtcgacttcctcgccgagcggacggccggc
ctggccgtgacgaaggtcgagctggcctcgatcagcgcgctcaagacgttcaacccgccg
ccccagtcgctcgagggggcacccatcgacggggtgcacaggcacgggaagttcctcgac
atcgactgcgacggcacccatctcgtcttccacctcgcccgggccggctggctgcggtgg
agcgaccagctgccgacgaccgtgctgagacccggcaagtccccgatcgccttgcgcgtc
aggctctccgatggcagcggcttcgacctgaccgaggccggcacgaagaagtcgctcgcc
gcctacatcgtccgcgaccccaaggaggtgcccggtgtcgcccggctcgggccggacccc
ctcgccgacgacttcacgctggagcgcttccgggagctgctcaccggtcggcggacccag
atcaagggcctgctccgcgaccaggaggtcatcgccggggtcgggaacgcctacagcgac
gagatcctccacgtggcgaaggtcagccccttcgccatcgccgggagcctgcccccggac
gtggtggaccgcctctacgcagcgctccgcgagacgctgtcgagcgccgtgcacgctgct
tcgggcaagccggccaaggagctcaaggatgccaagcgggcaggcatgcgcgtccatgcc
cgcacgggccaggcctgccccgagtgtggcgacgtcgtgcgggaggtgagcttcgccgac
acctcgctgcagtactgcgccacctgccagaccggtggcaagccgctcgccgaccggcgg
atgtcccggctgctcaagtag
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