Intrasporangium calvum: Intca_0425
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Entry
Intca_0425 CDS
T01385
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ica
Intrasporangium calvum
Pathway
ica03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Intca_0425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ica03019
]
Intca_0425
03400 DNA repair and recombination proteins [BR:
ica03400
]
Intca_0425
Enzymes [BR:
ica01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Intca_0425
Messenger RNA biogenesis [BR:
ica03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Intca_0425
DNA repair and recombination proteins [BR:
ica03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Intca_0425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
HEM4
ResIII
PcrA_UvrD_tudor
Tudor_FRX1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADU46973
UniProt:
E6S869
LinkDB
All DBs
Position
complement(461964..463658)
Genome browser
AA seq
564 aa
AA seq
DB search
MTSGLARDRRRIRTTARRVFGHDLLLPGQEEGTLALLQGHDVLLVAPTGSGKSLTYQLAG
TLLGGCTVVVSPLLALQQDQIDGLAEGARGLSAARLSSAESDAERTAVLERAAAGDLDFL
FLSPEQLANPAVAEALTAVAPTLWAVDEAHCVSVWGHDFRPDYFRLGELIARIGPARVVA
MTATAARPVRRDIVARLGLAEPRTIVTGFERDNIALEVVRCVTGDAQFETVLDTVDDAAA
SAGSGIVYCRTRKGAERYAAALTERGHRPVTYHAGLSQRRRDEAHRAFMDGSADVIVATS
AFGMGIDKPDVRFVVHADVPESPDTYYQEVGRAGRDGEPARAVLVYRPEDLSLGRFFAAP
VPERADLAAVLDAVGDAGSTEPSAVTEHSPFGARKTGRLLNLLELARQTGAGDQRRELVD
AAIDRARARRSLDESRVDMMRGYAETARCRAEFLLAYFGEQALEPCGHCDCCRAGLDGPP
CPVGDQGGYSMGDRVRHGEFGEGMVTDVHGDRITVIFEEVGCAPCPRRSSTNTTSSSRRD
TPPWAGPQPKRNRASPRGALESGG
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacctctggcctcgcccgcgaccggcgtcgcatccgaaccacggcccggcgcgtcttc
gggcacgacctcctccttcccgggcaggaggagggaacgctcgcgctcctccagggacac
gacgtgctcctcgtggcaccgacggggtcgggcaagtccctcacctaccagctggccggc
acccttctcggcggctgcaccgtcgtcgtctcgccgctcctcgcgctgcagcaggaccag
atcgacgggctggccgagggcgcgcggggcctcagcgccgcccggctcagctccgcggag
agcgacgcggagcgcacggccgtgctcgagcgggccgccgccggagacctcgacttcctc
ttcctgtcacccgagcagctggccaacccggccgtcgccgaggcgctcacggcggtcgcc
ccgacgttgtgggccgtcgacgaggcgcactgcgtctccgtctgggggcacgacttccgc
ccggactacttccggctcggcgagctcatcgcccggatcgggccggcgcgggtcgtggcg
atgaccgccacggccgctcgccccgtgcgccgcgacatcgtggcgcggctgggcctcgcc
gagccgcgcaccatcgtcaccggcttcgagcgggacaacatcgccctcgaggtggtccgg
tgcgtgaccggcgacgcgcagttcgagacggtgctcgacaccgtggacgacgcagcggcg
tcagccgggtccgggatcgtctactgccggacccgcaagggcgccgagcggtatgccgct
gccctcaccgagcggggccaccgtcccgtgacctaccacgccggcctgtcgcagcggagg
cgggacgaggcgcaccgggcgttcatggacggatcggccgacgtgatcgtcgcgacgtcc
gccttcgggatggggatcgacaagccggacgtgcgcttcgtcgtccacgcggacgtcccg
gagtccccggacacgtactaccaggaagtcggccgggccggtcgcgacggcgaaccggcc
cgggccgtgctcgtctaccgtccggaggacctgtccctgggccgcttcttcgctgctccc
gtccctgagcgggccgacctcgcagcagtcctcgacgctgtcggcgacgcggggagcacg
gaaccgtccgccgtgaccgagcacagcccgttcggcgcgaggaagaccggccgcctcctc
aacctcctcgagctggcccgccagaccggagccggcgaccagcgtcgagagctggttgac
gccgcgatcgaccgggcgcgggcgaggcgttccctcgacgagtcgcgggtggacatgatg
cgcggctacgccgagaccgcccgttgccgggcggagttcctgctggcctacttcggcgag
caggcgctcgagccgtgcggtcactgtgactgctgtcgggcgggcctggacggcccgccc
tgccccgtgggcgaccagggcgggtactcgatgggggaccgggtgcgccacggggagttc
ggcgaggggatggtgaccgacgtccacggggaccggatcaccgtgatcttcgaggaggtc
ggctgcgcaccctgtccacgacggtcatcgacgaacacgacctcctcgagccggcgtgac
accccaccgtgggccggtccgcagccgaaaaggaatcgagcgtccccacggggagcccta
gagtccggtgggtga
DBGET
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