Intrasporangium calvum: Intca_0966
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Entry
Intca_0966 CDS
T01385
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ica
Intrasporangium calvum
Pathway
ica03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Intca_0966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ica03019
]
Intca_0966
03009 Ribosome biogenesis [BR:
ica03009
]
Intca_0966
Enzymes [BR:
ica01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Intca_0966
Messenger RNA biogenesis [BR:
ica03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Intca_0966
Ribosome biogenesis [BR:
ica03009
]
Prokaryotic type
rRNA helicases
Intca_0966
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
CMS1
DUF7853
HEM4
Peptidase_M24
adh_short
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADU47491
UniProt:
E6SCT6
LinkDB
All DBs
Position
1062553..1064370
Genome browser
AA seq
605 aa
AA seq
DB search
MTDDSLDLERATEAEPTDDEPTVDEPTFADLGLDERILKATRDLGYEHPSPIQAATIPAM
LEGRDVVGLAQTGTGKTAAFALPILARLDLKQKTPQALVLAPTRELALQVCEAFERYAAN
LRGVHVLPVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADE
MLKMGFAEDVETILADTPADKQVALFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNI
TQRYLIVSYPQKVDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGFSAAAINGDIV
QAQRERTVDQLRSGKLDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAG
RSGDAISFVTPRERHLLKAIEKATRQGLTEMRPPTVEDINEVRLGRFDDAITAALQNEQL
DLFRQVVSHYVAEYDVPEADVAAALAIVQQRGEPMLLDPEPEPAPRRGRDRDDRPDRGDR
PVRSDRSDRSDRPDRGPQRDRPDRGPRRGSASFATYRIAVGKRHRVLPRQIVGALANEGG
LGREDFGKIDIRGDFSLVELPQELPASTWQRLRDTRISGQLIELARDDKSSGPRAASGRA
TRPTS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacgacagccttgacctcgagcgggcaaccgaagccgagcccaccgacgacgag
ccgaccgtcgacgaaccgacgttcgccgacctcggcctcgacgagcggatcctcaaggcg
acccgggacctcggttatgagcacccctcgccgatccaggccgccaccatcccggccatg
ctcgagggccgcgacgtcgtcgggctcgcccagaccggaaccggcaagacggccgccttc
gcgctgcccatcctcgcccggctcgacctcaagcagaagacgccgcaggcgctcgtgctc
gccccgacccgcgagctggccctgcaggtctgtgaggccttcgagcggtatgccgccaac
ctccgcggagtgcacgtgcttcccgtctacggcgggcagggctacggcgtccagctcagt
gcgctgcgccgcggcgtccacgtcgtcgtcggcacgcccggtcggatcatggaccacctc
gagaaggggaccctcgacctgagcgagctgcggttcctcgtgctcgacgaggccgacgag
atgctgaagatgggcttcgccgaggacgtcgagacgatcctggccgacaccccggccgac
aagcaggtcgcgctcttctcggcgacgatgcccgcccagatccggcgcatctccaagcag
catctcaccgatccggtcgagatcaccgtcaaggcgaagacgacgaccgcgccgaacatc
acgcagcgctacctcatcgtcagctacccgcagaaggtcgacgcgctgacccggatcctc
gaggtcgagaacttcgaggggatgatcgtcttcgtccggacgaagaacgagaccgagacc
cttgccgagaagctgcgtgcccgcggcttctccgccgccgccatcaacggcgacatcgtg
caggcccaacgcgagcgcaccgtcgaccagctgcggtccggcaagctcgacatcctcgtt
gccaccgacgtcgccgcccgcggtctcgacgtcgagcggatcagccatgtcgtcaacttc
gacatcccgaccgacaccgagtcctacgtccaccgcatcggccgcacgggccgagcaggc
cgcagcggcgacgccatctcgttcgtcaccccgcgcgagcggcacctgctcaaggccatc
gagaaggccacccggcagggcctcaccgagatgcgcccgccgaccgtcgaggacatcaac
gaggtgcgactcggccggttcgacgacgcgatcaccgcggcgctgcagaacgagcagctc
gacctcttccggcaggtcgtctcgcactacgtcgccgagtacgacgtgcccgaggccgac
gtcgccgcggcgctcgccatcgtccagcagcgcggggagccgatgcttctcgatcccgaa
ccggagccggccccccggcgcggtcgcgaccgcgacgaccgccccgaccggggagaccgc
cctgttcgatccgaccgatccgatcgatccgaccgccccgaccggggtccgcagcgggac
cgccccgaccgtggcccgcgtcgaggcagcgcctccttcgcgacctaccggatcgcggtc
ggcaaacggcaccgcgtcctgccgcggcagatcgtcggcgccctcgccaacgagggaggc
ctcggtcgcgaggacttcgggaagatcgacatccgcggcgacttctccctcgtcgagctc
ccccaggagctgccggcgagcacgtggcagcggcttcgggacacccggatctcgggccag
ctcatcgagctggcccgggacgacaagtcctcggggccgcgcgcagcatccggccgggcg
acccggccgacgagctag
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