Intrasporangium calvum: Intca_1353
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Entry
Intca_1353 CDS
T01385
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ica
Intrasporangium calvum
Pathway
ica03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Intca_1353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ica03019
]
Intca_1353
03400 DNA repair and recombination proteins [BR:
ica03400
]
Intca_1353
Enzymes [BR:
ica01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Intca_1353
Messenger RNA biogenesis [BR:
ica03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Intca_1353
DNA repair and recombination proteins [BR:
ica03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Intca_1353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Phage_Coat_B
Motif
Other DBs
NCBI-ProteinID:
ADU47869
UniProt:
E6S6X4
LinkDB
All DBs
Position
complement(1513769..1515955)
Genome browser
AA seq
728 aa
AA seq
DB search
MPSSPAALAALDLRERATVALRRLVGRDDADFRDGQLEAIEALVTGHRRVLVVQRTGWGK
SAVYFVATALRRAEGAGPTVIVSPLLALMRDQIGAAERAGIRAVTLNSTNADEWAAVSGA
LARGEVDVLLVSPERMNNPRFREEQLPGLAQTCGLLVVDEAHCISDWGHDFRPDYRRIRD
LLTTLPEETPVLATTATANARVVTDVVEQLGAGGRDVLTLRGPLARASLRLGVLPLSAPE
QRLAWLIAHLGDLPGSGIVYALTVSAAEDVAAALREAGYEVAAYTGRTEPGERIRLEQDL
RDNRLKALVATSALGMGFDKPDLGFVLHLGAPSSPVAYYQQVGRAGRATERADVLLMPGP
EDKDIWRYFASASMPRQDQADAVLRALAQTGRPLSTVALESIVDVRRTRLELLLKVLDVD
GAVQRVQGGWVATGEPWIYDSERYQRVSDARQREQQLMVDYERSDGCRMAFLQQCLDDDT
AQECGRCDRCAGTWFPDAIPEAAVLTARSRLERPGVALEPRVQWPPGMDRLGVPVKGRIA
PSVALSEGRAVARLTDLGWGQRLRELLRSTTPQPGSTSPEASSAEPAASDRPVPPEVLRA
VVDVLRAWDWAERPVAIVAVPSRHRPQLVTSLATGLGELGRLPYLGALDLVEGGPVGEPG
GNSAFRLANIWGRFTVGAELHQRLQGVPGPVLLVDDVADSRWTLTVAGALLREAGAPAVL
PLTLAVEA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgccgagctcacccgccgccctcgccgccctcgacctgcgcgagcgcgcaaccgtcgcg
ctgcggcggctcgtcggacgggacgacgccgacttccgcgacggccagctcgaggccatc
gaggcgctggtgaccgggcaccgcagggtcctcgtcgtccagcgcaccgggtggggcaag
tcggcggtctacttcgtcgcgaccgccctgcgccgggccgagggagccggtccgaccgtc
atcgtctcccccctgctcgcactcatgagggaccagatcggcgcggccgagcgcgcgggt
attcgcgccgtgacgctcaactcgacgaacgctgacgagtgggcggccgtgtccggcgcc
ctggcccggggtgaggtggacgtgctgctcgtcagcccggagcgcatgaacaacccgcgg
ttccgcgaggagcagctgcctgggctggcccagacgtgcgggctgctcgtcgtcgacgag
gcacactgcatcagcgactggggccacgacttccgccccgactaccgccggatccgggac
ctgctcacgacgctgccggaggagactcccgtgctggcgacgactgccacggccaatgcg
cgggtcgtgaccgacgtcgtcgagcagctgggcgccggaggccgagacgtcctcacgctg
cgcggtccgctggcccgggcctccttgcgactgggcgtgctgccgctgtccgcccccgag
caacgtctggcctggctcatcgcacacctgggcgacctgcccggctcgggcatcgtctac
gccctgaccgtctcggcggccgaggatgtcgcggctgcgcttcgtgaggccggctacgag
gttgccgcctacaccgggcgcaccgagcccggtgagcggatccgcctggagcaggacctg
cgagacaaccggctcaaggcgctcgtcgcgacctcggcgctcggcatgggcttcgacaag
ccggacctgggcttcgtgctccacctcggcgcaccttcctcgccggtcgcgtactaccaa
caggtcggtcgcgcgggtcgcgccaccgagcgggccgatgtcctgctcatgccgggcccg
gaggacaaggacatctggcgctacttcgcctcggcgtcgatgccgcggcaggaccaggcg
gacgcggtgctgagggcgctcgcccagactgggcgcccgctgtcgaccgtcgcgctcgag
tcgatcgtcgacgtgcgccggacccgactggagctgctcctcaaggtccttgacgtcgac
ggcgcggtgcagcgcgtccaagggggctgggtcgcgaccggcgagccgtggatctacgac
tcggagcgctaccagcgcgtctcggacgcccgtcagcgtgagcagcagctcatggtcgac
tacgagcggtccgacggctgccggatggccttcctgcagcagtgcctggacgacgacacg
gcccaggagtgcggtcgctgcgaccggtgtgccgggacgtggttccccgacgcgattccc
gaggccgccgtgctcacggcgcgctcccgcctcgagcgtcccggggtcgccctcgagcca
cgggtccagtggccgcccggcatggaccggctcggcgtgccggtcaaggggcggatcgcg
cccagcgtggccttgtcggagggccgcgccgtggcccgcctcaccgacctcggctggggg
cagcggctgcgcgaactgctccgctcgaccacccctcagccggggtcgacgagcccggag
gcgagcagcgcggagccggcagcgtcggaccgcccggtcccgccggaggtgctccgggcc
gtggtggacgtgctccgggcctgggactgggctgagcgccccgttgcgatcgtggcggtg
ccgtcgcggcaccgaccgcagctcgtgacgtctcttgccaccggcctcggcgagctcggc
aggctgccctacctgggcgccctcgacctggtcgagggaggcccggtcggcgagccgggg
ggcaacagtgccttccgcctggcgaacatctggggccgcttcaccgtcggggcagagctg
caccagcgtctccaaggcgttcccggcccagtcctgctcgtcgacgacgtcgcggactcg
aggtggaccctcacggtggccggcgcgctgctgcgtgaggcgggcgcgcccgccgttctc
ccgctcaccctcgccgtggaggcctga
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