Intrasporangium calvum: Intca_2066
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Entry
Intca_2066 CDS
T01385
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ica
Intrasporangium calvum
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ica03016
]
Intca_2066
Enzymes [BR:
ica01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Intca_2066
Transfer RNA biogenesis [BR:
ica03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Intca_2066
Prokaryotic type
tRNA splicing ligases
Intca_2066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADU48577
UniProt:
E6SCY9
LinkDB
All DBs
Position
complement(2319435..2320643)
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AA seq
402 aa
AA seq
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MQTFPVALPGASASTLMWADPADVEPAAQEQLRNISALPWVHGVRVMPDVHLGKGATVGS
VIAMRDAVSPAAVGVDIGCGMTAVRTSLTASDLPDDLGPLRAAVEQVMPVGWAAHNGSAP
VLGRDQVLAARVDSLMGRFSELRAPKIAERQGRARAQCGSLGSGNHFWELCEGDDGRIWL
MLHSGSRNIGKELADRHIETAKTLEHNLGLPDRDLAVFLADTEEMAAYLHDLYWAQEYAL
LNREVMMASTREVVAQHFPHVRFDEPVRCHHNYVSEESYDGVDVIVTRKGAIRAGAGDLG
LIPGSMGTGSYVVRGLGSEQSYNSASHGAGRRMSRNAAKRRFTVEDLQAQTLGVECRKDA
GVLDEIPGAYKDLESVIAAQTTGANPLVEVVARLTTLLCVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccttcccggtcgcactccccggcgcgagcgcatcaacgctgatgtgggccgac
cctgccgacgtcgagccggcggcccaggagcagctgcggaacatcagcgcgctcccgtgg
gtccacggagtgcgagtcatgcccgacgtccacctgggcaagggcgcgaccgtcggctcg
gtcatcgcgatgcgcgacgccgtgtccccggcggccgtgggggtcgacatcggctgtggc
atgacggccgtgcgcaccagcctcacagcctccgacctccccgatgacctgggcccgctc
cgggccgccgtggagcaggtcatgccggtggggtgggcggcgcacaacgggtcagccccc
gtcctcgggcgggaccaggtgctcgccgcacgcgtcgactcactcatggggcggttcagc
gagctgcgggcccccaagatcgccgagcgtcagggacgggcccgggcgcagtgcggctcg
ctcggctccgggaaccacttctgggagctctgcgagggcgacgacggccggatctggctc
atgctccactcggggtcccgcaacatcggcaaggagctcgccgaccggcacatcgagacg
gccaagacgctggagcacaacctcggcctgcccgaccgggacctggccgtcttcctcgcc
gacacggaggagatggcggcctacctccacgacctgtactgggcgcaggagtacgcgctg
ctcaaccgggaggtgatgatggcgagcacgcgggaggtcgtcgcacagcacttcccgcac
gtgaggttcgacgagccggtgcggtgccaccacaactacgtctcggaggagtcctacgac
ggcgtcgacgtcatcgtcacgaggaaaggtgcgatccgtgccggcgccggggacctcggt
ctcatccccgggtcgatgggcaccgggtcgtacgtcgtgcgcggcctgggcagcgagcag
tcctacaactcggccagccacggggccgggcgacggatgtcgaggaacgcagccaagcgg
cggttcaccgtggaggacctccaggcgcagaccctgggggtcgagtgccgcaaggatgcg
ggggtcctggacgagatccccggtgcctacaaggacctcgagtcggtcatcgcggcccag
acgacgggggcgaacccgctcgtggaggtggtggcccggctcacgaccctgctctgcgtc
aagggctga
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