Intrasporangium calvum: Intca_3227
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Entry
Intca_3227 CDS
T01385
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ica
Intrasporangium calvum
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ica03016
]
Intca_3227
Enzymes [BR:
ica01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Intca_3227
Transfer RNA biogenesis [BR:
ica03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Intca_3227
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DUF3618
Alkyl_sulf_C
Motif
Other DBs
NCBI-ProteinID:
ADU49711
UniProt:
E6SD93
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All DBs
Position
complement(3562355..3562930)
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AA seq
191 aa
AA seq
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MRLFIAIVPPEEVLDDLAEHVEPRRLADEQGASELRWTDRHQWHVTLAFLGEVAEWRLDD
LSAAVAATAARHPAPLVRLAGAGAFPNPYAARVLFTDVEQVRGDLRRLASGIRTASNGSG
ATPDGTRFHAHVTLGRFRRPTEATRWIRTFEAYEGPVWRADEVAVVQSHLGEGRGRRPRY
EVVATAPLTSA
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctcttcatcgccatcgtcccgccggaggaggtcctcgacgacctcgccgagcac
gtcgagccgcgccggctggccgacgagcagggtgcctccgagctgcgctggaccgaccgg
caccagtggcacgtcacgctcgccttcctcggagaggtcgcggagtggcggctcgacgac
ctcagcgcggccgtggccgcgacggccgcccggcaccccgctccgctggtgcgcctggcc
ggggccggagccttccccaacccctatgccgcccgggtgctgttcaccgacgtcgagcag
gtccgcggcgacctccggaggctggcgagcggcatccgcaccgcctccaacggttcgggg
gcgacgccggacggcacccggttccacgctcacgtcaccctgggccggttccgccggccg
accgaggcgactcgctggatcaggacgttcgaggcgtatgaggggccggtgtggcgggcg
gacgaggtcgcggtcgttcagtcgcatctcggggaggggcgcgggcggcgtccgcgctac
gaggtcgtggccaccgctccgctgacgtcggcctag
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