Candidatus Ishikawaella capsulata: ICMP_134
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Entry
ICMP_134 CDS
T04149
Symbol
recD
Name
(GenBank) RecBCD complex alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ICMP_134 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
icp03400
]
ICMP_134 (recD)
Enzymes [BR:
icp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ICMP_134 (recD)
DNA repair and recombination proteins [BR:
icp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ICMP_134 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
CbiA
UvrD_C
nSTAND3
DEAD
AAA
T2SSE
ATPase
AAA_29
AAA_28
Zeta_toxin
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAH82995
UniProt:
C5WCD9
LinkDB
All DBs
Position
complement(163356..165182)
Genome browser
AA seq
608 aa
AA seq
DB search
MSDMFNKLLMQAVEDKLLSFFDVNFARLLANEQHPFLLLLSAYVSAKSREGHTCLPLEFF
SKGQLFSTSHSDLSKKLWQITGVPSNLMKYLNSWNAISNGQDATPLVLSQNCIYLHRFWK
NECIIANFFNNNYDINTFDTKTIRLVLDNLFNNHTYQKIAAATAITKKISIISGGPGTGK
TTTVIKLLIAIIRLNINTIRIKLAAPTGKAASRLTDSLTHLLNKLSISPEEQCKLPHEAT
TLHRLLGAQYESKGMIYNISNKLPLDILVLDEVSMIDLSMMSNLVAALPEHAQVIFIGDR
NQLPSIETGSIMNDLCMRSKNYFSPLRAWQLTQLTGCKIRSYATKTAKIIDDNICLLSVN
YRFDSQSGINRLAQAVKMGNIKRVAHIFNMCFEDVNKKTITDFVDYQSMLGDILENYIEF
LTLINKQENPLKIISAFIRHQVICPLRDGPFGVQGLNYYIEQTLIQRHLISMYSNNQHYL
GRPIIITRNDSSLGLSNGDIGIILYYKYQDMQAFFIKKNLTIKTVELNRLPLHDTAWAIT
VHQSQGSEFDAISLVMPREFIPLLTRELIYTAITRPCKRLIIYTNNAVFESAIKNKTYRY
SRLRNRIN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacatgttcaataagcttttaatgcaagcagtagaagacaaattactatctttt
tttgatgttaattttgcacgattattagctaatgaacaacatccatttttactattatta
tcagcatatgtcagtgctaaaagcagggaaggtcacacttgtttacctttagaatttttt
tctaaaggacaattatttagtacttctcattcagatttatctaaaaaattatggcaaata
acaggagtaccaagtaatttaatgaagtatctaaatagttggaatgccattagcaatgga
caagatgctacaccattagtgctaagtcaaaattgtatttacttacataggttttggaaa
aatgaatgtattatcgcaaatttttttaataataactatgatataaatactttcgacacc
aaaactataagattagtactagataatttatttaataatcatacttatcaaaaaattgca
gctgctacagcaataactaagaaaatatcaataatttctgggggtccaggtactggcaaa
actactacagtaatcaaattacttatcgcaattattcgccttaacatcaatactataaga
attaaactagctgctcctactggtaaagcagcttctcgcttaactgatagcttaactcat
ctattaaataaattgtctatttctccagaagaacaatgtaaattaccacatgaagcaact
acattacaccgtttactaggtgcacagtatgaaagtaaaggtatgatttataatataagt
aataaattacctctagacattttagtgttagatgaagtttctatgatagatttgtcgatg
atgtctaatttagttgctgctcttccagagcatgctcaggtgatatttattggagatcgc
aatcagttaccttctatagagacaggtagtataatgaacgatttgtgtatgcgtagtaaa
aattactttagccctttacgtgcttggcagttaacgcaattaacaggatgtaaaattaga
agttatgctactaaaactgcaaaaattatagatgataatatttgtttattatctgttaat
tacagattcgatagtcaatcaggtattaaccgtttagcacaagcagtaaaaatgggtaat
ataaaacgtgtagcacatatttttaatatgtgttttgaagatgttaataaaaagaccata
acggattttgtagactatcaatcaatgttgggagatattttagaaaattatatagaattc
ctcacattaatcaataaacaagaaaatccattaaagattatttctgcatttatccgtcac
caggtaatttgtccattacgcgatggaccttttggagtacaaggattaaattattatatt
gaacaaacattaatacaaagacatttaatttctatgtattccaataatcagcattatcta
ggacgtccaataataattacacgcaatgatagttctttaggattatccaatggtgatatt
ggtattattttatattataaatatcaagatatgcaggcatttttcataaaaaaaaactta
actattaaaacagttgaactgaaccgtcttcctctccatgataccgcttgggcaattaca
gtacatcaatcacaaggatcggaatttgatgctatatcattagttatgcctagagaattt
atacctctattaacaagggaattaatatatactgctattactcgtccttgtaagagatta
ataatttatactaataatgcagtgtttgaatcagcaataaaaaataaaacttatcgttat
agtagattaagaaatagaattaattag
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