Candidatus Ishikawaella capsulata: ICMP_277
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Entry
ICMP_277 CDS
T04149
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ICMP_277 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
icp03021
]
ICMP_277 (rpoA)
03400 DNA repair and recombination proteins [BR:
icp03400
]
ICMP_277 (rpoA)
Enzymes [BR:
icp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ICMP_277 (rpoA)
Transcription machinery [BR:
icp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ICMP_277 (rpoA)
DNA repair and recombination proteins [BR:
icp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ICMP_277 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BAH83136
UniProt:
C5WCT0
LinkDB
All DBs
Position
313892..314875
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AA seq
327 aa
AA seq
DB search
MQGSVIEFLKPRLVDIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSLPGYAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKSLAVKVENKEEVILTLQKSGIGPVTAADINHNTG
VEIIKPEHVLCHLTSENASINMRIKVQRGRGYVTALSRIHLQENRPIGRILIDACYSPID
RISYNVESARVEKRTDLDKLIIDMETDGTIDPEQAIRCAATILAEQLESFVDLRNINKVE
VKEEKPEFDPLLICSVDDLELTVRSANCLKAEAIHYIGDLVQRTELELLKTPNLGKKSLT
EIKDVLAARGLSLGMRLENWPPAIIIE
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaatagagtttcttaaaccacgtttagtagatatagaacaaataagt
tcaacacatgcaaaagtaactcttgagccattagaacgtggtttcggacatactcttggt
aatgcactacgtcgtattcttctttcttctctgccaggatatgcagtaactgaagttgaa
atagatggcgtgcttcatgagtatagtaccaaagaaggcgttcaggaagatatattagaa
atattacttaaccttaaaagtttagcagttaaggttgaaaataaagaagaggtaatttta
actttacaaaaatctggtattggccctgtaactgctgctgatattaatcataatacaggt
gtagagattattaaaccagaacatgttttatgtcatctgactagtgagaatgcatctatt
aatatgcgcattaaagtacaaagaggtagaggatatgttactgctttaagtagaattcat
ttacaagaaaatcgccctattggccgtattctaattgatgcatgttatagccctatagat
cgtatttcttacaatgtagaatcagcaagggtagaaaaacgtacggatttagataaacta
attatagatatggaaacagatggtacgattgatcctgaacaagctattcgctgcgctgct
actattttagctgaacaactcgaatcctttgttgatttacgtaatataaataaagtagaa
gttaaagaagaaaaaccagagtttgatcccctattgatttgttctgttgatgatttagaa
ttgacagtgcgttctgctaattgtctaaaagcagaagcaattcattatatcggtgattta
gtacaacgtacggaactagaattacttaaaactcctaatctgggtaagaaatctcttact
gaaatcaaagatgtacttgctgctagaggtctttctttaggtatgcgtttagaaaattgg
ccaccagcaattattatagaatag
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