Candidatus Ishikawaella capsulata: ICMP_296
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Entry
ICMP_296 CDS
T04149
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ICMP_296 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
icp03019
]
ICMP_296 (pnp)
03016 Transfer RNA biogenesis [BR:
icp03016
]
ICMP_296 (pnp)
Enzymes [BR:
icp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ICMP_296 (pnp)
Messenger RNA biogenesis [BR:
icp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ICMP_296 (pnp)
Transfer RNA biogenesis [BR:
icp03016
]
Prokaryotic type
tRNA degradation factors
ICMP_296 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BAH83151
UniProt:
C5WCU5
LinkDB
All DBs
Position
335647..337770
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AA seq
707 aa
AA seq
DB search
MLLVKVRVLILLNPIIHKFQYGQHIVTLETGIMARQSTSAVMASMDDTAVLITVVAQKKP
KDNKGFFPLTVNYQERTYAAGRIPGGFFRREGRPNENETLISRLIDRSIRPLFPEGFLNE
IQIIATVVSLNPQINPDLIAIIGTSAALSISGIPFHGPIGAARIGYINEEYILNPTTDDS
KYSHLDLIVTGTEKAVLMVESQANLLTEEQILEAVIFGHNKQKKIIENINILVKNAGKPM
WNWQPSPINETLNQQIIELTEERLDHAYRIREKQARHEEIKLIKNDAIAALSSDNLISEA
EITYLISSIEKQIVRNRLFNGESRIDGRDKNMVRSIDVRTGVLPRTHGSALFTRGETQAL
VSATLGTARDAQNMDGIMGEKVENFLFHYNFPPYSVGEIGMIGSPQRREIGHGRLAKRSL
LPIMPQDDIFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKK
DQEIIVLSDILSDEDHLGDMDFKVAGTYNGITALQMDIKIEGITAEIMRLALNQAKCARR
KILKVMEQAISEPRKEISEFAPRIQIIRINKNKIKDIIGRGGVVIRAMSEETGANIEIGD
NGIVKVIASDYLKVKAAICRIEEIIAGIEVGHIYTGKVTRIVDFGAFVSIGNKEGLVHIS
QIANNHVQTVSDYLKIGQEVMVKVLEVDRQNRIRLSIKAALTTLSKF
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
ttgctactagttaaggtaagggtattaattttgcttaacccgatcatacataaatttcaa
tatggtcaacatattgttacattagaaaccggtataatggcacgtcaatcaacttcagct
gttatggcaagtatggatgatactgcagtattaataacggtggttgcacaaaaaaaacct
aaagataataaaggtttttttccactaactgttaattaccaggaacgcacttatgctgct
ggacgcatcccaggaggtttttttcgccgagaaggtcgtcctaatgagaatgaaactctt
atatctcgtctcattgatcgttctataagacctctttttcctgaaggatttttgaatgaa
atacaaataatagcaacagttgtttctcttaatccacagattaatcccgatcttatagca
ataatagggacatctgctgctctttctatttcaggtattccttttcatggtcctattgga
gctgctcgtataggttacattaatgaagaatacattcttaatcctaccactgatgatagt
aaatattctcatttagatttaatagttacgggtacagaaaaagctgtattaatggtggaa
tcacaagcaaatttgcttactgaagaacaaatactagaagctgttatttttggtcacaat
aaacaaaaaaaaattattgaaaatattaatattttggtgaagaatgcaggtaaaccaatg
tggaattggcaaccatcacctataaatgaaacattaaatcaacagattattgaactgacc
gaagaacgtcttgatcatgcttatcgtattcgcgaaaaacaagcccgtcatgaagaaatt
aaattaataaaaaatgatgctatcgctgctttatcatctgataatcttatttcagaagct
gaaattacatacctaatatcttctattgagaagcaaatagtacgtaatcgtttatttaat
ggcgaatctcgcattgacggtcgtgacaaaaacatggttcgtagtattgatgtacgaact
ggtgtgttaccacgtactcatggttcagctttatttactcgtggtgaaacacaagcatta
gtatcagctacattgggtactgctcgtgatgcacaaaatatggatggaataatgggtgaa
aaagtggaaaatttcctatttcactataattttcctccttattctgtaggagaaattggt
atgattggttcacctcaacgccgtgaaataggtcatggacgtttagcaaaaaggagttta
ctccctatcatgccacaagatgatatttttccttatactatacgtatagtatcagagatt
acagagtctaatggctcttcttccatggcttctgtatgtggggcatctttagcactgatg
gatgcaggagtgcctataaaatctgcggtagccggtattgccatgggattagtcaaaaaa
gatcaggaaattattgttctttctgatattttaagtgatgaagatcatttaggagatatg
gattttaaagttgctggtacttataatggtattacagctttacaaatggatataaaaatt
gaagggataactgcagaaattatgcgattagcgctcaaccaagcaaaatgtgctcgtaga
aagatactaaaagttatggaacaagcaattagtgaaccacgcaaagaaatttctgaattt
gctccaagaattcaaattattcgcattaataaaaacaaaattaaagatatcattggtaga
ggtggagtcgttattagagctatgtctgaagaaacaggtgcaaatatagaaataggtgat
aatggtatagtaaaagttatagcaagtgattatctaaaagtaaaagcagcaatttgtcgt
atagaagaaataatcgctggcatagaagtcgggcatatttatactggtaaagtgacacgt
attgtggattttggagcatttgtaagtattgggaataaagaaggactagtacatatttct
caaattgcaaataatcatgttcaaacagttagtgattaccttaagattggacaagaagta
atggtcaaagtcctagaagtagatcgtcaaaatcgcatacgtctaagtattaaagcagcg
ctaacgacgctatctaagttttaa
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