Candidatus Ishikawaella capsulata: ICMP_366
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Entry
ICMP_366 CDS
T04149
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03030
DNA replication
icp03430
Mismatch repair
icp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ICMP_366 (holB)
03430 Mismatch repair
ICMP_366 (holB)
03440 Homologous recombination
ICMP_366 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
icp03032
]
ICMP_366 (holB)
03400 DNA repair and recombination proteins [BR:
icp03400
]
ICMP_366 (holB)
Enzymes [BR:
icp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ICMP_366 (holB)
DNA replication proteins [BR:
icp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ICMP_366 (holB)
DNA repair and recombination proteins [BR:
icp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ICMP_366 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
BAH83219
UniProt:
C5WD13
LinkDB
All DBs
Position
complement(423795..424811)
Genome browser
AA seq
338 aa
AA seq
DB search
MVKRTNNMNVCYPWLKSVYYQIIKQYQYGYNHNALLIKVMPGIGENVLIWNISCWLMCQK
PKYFENCGNCYSCQLMCANTHPDWHSLKIEKSKPLDIEKVRNLIEKINTYPIQLGIKIVY
LPNIGYWSEAAVCTLLKTIEDSPTNTYFFLTHTEQRFSSLILQSRCIKIYIPPPNEKESH
DWLTTRIPQKNQELIIIALRLTGGSPLLALSLLNDKKYWQTRKILFDTMYNALQKDILLL
LPILNNEQILQRINVIISLLLDAIKYHYKATKNFVNSDQINIINLITKHFSANCLLESAS
LWMKTYHRLIQVPTVNRELLIVDQLLTWERILHNNLIE
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
ttggttaagcggacaaataatatgaatgtctgttatccctggttaaagtctgtatattac
caaattattaaacaatatcagtacggttataatcataatgccctattgattaaagttatg
ccaggaattggagaaaatgtgctaatttggaatattagttgttggttaatgtgtcaaaaa
ccaaaatattttgaaaattgtggaaattgttacagttgtcaattaatgtgtgctaataca
catcctgattggcattctttgaaaatagaaaaatctaaaccattagatatagaaaaagta
agaaatcttattgaaaaaattaatacctatcctatccaactaggaattaaaatagtttat
ttgccaaatattggatattggagtgaagcggcagtttgcacattactaaaaacaatcgaa
gattctccaaccaacacgtattttttcttaactcacactgaacaacgattctcctctctg
atactccagagtcgttgtataaagatatatattcctcctccaaatgagaaagagagtcat
gattggttaactactagaattccccaaaaaaatcaggagttaattataatagctttacgc
ctaacaggtggttctcctcttttagctctatcattattaaatgataaaaaatattggcag
acaagaaaaattctgtttgatacaatgtataatgcattacaaaaagatattttattatta
ttaccaatattaaataatgaacaaatacttcagcgtattaatgtaataatatctttatta
ttagatgcaataaaataccattataaagcaactaaaaattttgtgaatagtgatcaaata
aatattatcaatttaatcacaaaacatttttctgctaattgtttactagaaagcgcgtct
ctatggatgaaaacctatcataggttaattcaagtacctacagtaaatcgtgaattattg
attgttgatcaattattaacttgggaaagaattttacataataaccttatagaataa
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