Candidatus Ishikawaella capsulata: ICMP_525
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Entry
ICMP_525 CDS
T04149
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ICMP_525 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
icp03021
]
ICMP_525 (rpoB)
03400 DNA repair and recombination proteins [BR:
icp03400
]
ICMP_525 (rpoB)
Enzymes [BR:
icp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ICMP_525 (rpoB)
Transcription machinery [BR:
icp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ICMP_525 (rpoB)
DNA repair and recombination proteins [BR:
icp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ICMP_525 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
BAH83372
UniProt:
C5WDG6
LinkDB
All DBs
Position
complement(597030..601073)
Genome browser
AA seq
1347 aa
AA seq
DB search
MVYSYTEKQRIRKSFGKRPKVLDVPYLLSVPLDSFQKFIEHDPKGQYGLEAALRSIFPIK
SYNDNAELQYVSYRLGEALFDVQECHMRGITYSVPLRVKLRLVIYDPDALEITVKHIKEQ
EVYMGEIPLMTEHGTFIINGIERVIVSQLHRSPGVFFDSDKGKTHASGKVLYHARIIPYR
GSWLDFEFDSKDHLFVRIDRRRKLPATILLRALNYSVKQILNIFFEKVCFKRYENKFKME
LIPERLRGETASFDIEYNGTTYISQGQRITSRHIRQLEQNNIQYIEVPNEYLLGKVVAKD
YIANGECLVAANMPLSSEILDNLKRYGFNTIETIFTNDLDNGPYISETLSIDPSHDRLSA
IVEIYRIMRPGEPPTREAAEQLFENIFSLEERYDLSVVGRMKLNKSLLRDEVDGPSTLSK
NDIISVMKKLIDIRNGKAEIDDIDHLGNRRIRSVGEMTENQLRLGLIRVERAVKERLSLG
ELDNIMPQDMINAKPISAAIKEFFSSSPLSQFMDQNNPLSEITHKRRISALGPGGLTRER
AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRLVVNGVVSAE
DIHYLSAIEESNYVIAQANAQVDDNGHFLDDLITCRNKGESSLFPPEQIHYMDVSTQQIV
SVGASLIPFLEHDDANRALMGANMQRQAIPTLRADKPLVGTGMERVVAIDSGVTVIAKRS
GLVEYVDAARIVVKANEKERFLGEAGIDIYNLTKYIRSNQNTCINQMPCVRLGEIIERGD
VLADGSSTDLGELALGQNMRVAFMPWNGYNFEDSILISERVVQEDRFTTIHIQELSCLSR
DTKLGAEEITADIPNIGEAALAKLDESGIVYIGAEVTEGDILVGKVTPKGETQLTPEEKL
LRAIFGEKASDVKDSSLRVPNGLSGTVIDVQMFTRDGIEKDQRGLAMGTMQVKPNKDLFE
EFNIMEAGLLRRIKDILIVNKIEINKIESLSPEKLMKFKLTDKDKQNELSQLVTQYKLLK
NEFDKKTKTNTKQYKITQGDELAPGVMKVVKVYLAVKRQIQTGDKMAGRHGNKGVISKIN
PIEDMPYDEHGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGNKINEMLKKQEKVSK
LREFMQKAYNIGNNIQQKVDLSNFSDNEILRLAKNLKAGMPIATPVFDGAEEEEIKNLLE
LGDLPQSGQIKLFDGQTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTTMYKNIVDGNHRMDPGMP
ESFNVLLKEIRSLGINIELEEQENLVT
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgaaaaacaacgtatccgtaaatcttttggtaagcgtccgaag
gtattagatgtaccttatctactttctgtaccacttgattcatttcaaaaatttattgaa
cacgatccaaaaggtcaatatggtttggaagctgctttgcggtccatatttcctataaaa
agttacaacgataacgctgaactacaatatgtaagttatcgcttgggtgaagccttattt
gatgtacaagaatgccatatgcgaggaataacctattctgttccccttcgtgtgaaattg
cgtttggtaatttacgatccagatgcattagaaattactgtaaaacatattaaagaacaa
gaagtatatatgggtgaaatacctcttatgacagaacacggcacttttatcattaatggt
attgaacgtgttatagtgtctcagttacatcgtagtcctggtgtattttttgatagtgat
aaaggaaaaactcatgcttcaggcaaagtactttaccatgcacgtataattccttataga
ggttcatggcttgattttgaatttgattctaaagatcatctttttgttcgtatagatcgt
cgtcgcaagctaccagctactattcttctcagagcattaaattattctgtaaagcaaatt
ttaaatattttttttgaaaaagtctgttttaagagatatgaaaataaattcaaaatggag
ctcatacctgaacgtctaagaggagaaacggcttcttttgatattgaatataatggtact
acatatatatcacaaggccaacgtataaccagtagacatatacgtcaattagaacaaaat
aatatccaatatattgaagtaccaaatgaatatttgttaggtaaagtggtagctaaagac
tacatagcgaatggtgaatgtctagtagcagctaacatgccattatcatcagagatatta
gataatctaaaaagatatggattcaatactattgaaaccatatttactaacgatcttgat
aatggtccttatatttcagaaaccttaagtattgatccaagtcatgatagattgagtgct
atagtagaaatttatcgcataatgcgtcctggagaaccacctactcgtgaagcagctgaa
cagctattcgaaaatatcttttccttagaagaaagatatgatctttcagtagttggtcgt
atgaaattaaataaatcactacttcgtgatgaagtggatggtccttccaccttaagcaaa
aatgatattataagtgtaatgaaaaaacttattgatatccggaatggtaaagcagaaatt
gacgatattgaccatctgggtaaccgtcgtatacgttctgttggggaaatgactgaaaat
caattacgacttggtttgattcgtgtggagcgtgcggtaaaagaacgtttatcattgggt
gaattagataacattatgcctcaagatatgattaatgctaaacctatttcagccgcaata
aaagaattttttagttctagtccactttcacaatttatggatcaaaataatcctctctct
gaaattacacataaacgtcgtatttctgctttaggacctggtggattaactcgagaaaga
gctggatttgaagtaagagatgttcatccgactcattatggaagagtgtgtcctattgaa
acaccagaaggtcctaatattggtttaataaattctttatctgtgtatgcgcgtactaat
gagtatggatttttagaaactccttatcgtctggttgttaatggtgtcgtttctgctgaa
gacattcattatctttctgctattgaagagagtaattacgttatagctcaagctaatgcc
caagtagacgataacggacattttctagatgatttaataacttgtagaaataaaggtgaa
tctagtttatttcctcctgaacaaattcattacatggatgtatctactcagcaaatagtt
tctgtaggtgcttctttaattccttttttagaacatgatgatgctaatcgtgccctaatg
ggcgcaaatatgcaacgtcaagccataccaactttacgtgctgataagccattagtagga
accggtatggaaagggttgtagcaattgattctggagtaactgtgattgcaaaacgtagt
ggtttagttgagtatgtcgatgcagcacgtattgttgttaaagcaaatgaaaaggaacga
tttttaggagaagcaggtattgatatttataatttaactaaatatattcgttcgaatcaa
aatacttgtattaatcaaatgccctgtgttcgtttaggagaaatcattgagagaggtgat
gttttagcagatggatcctctactgatcttggtgaattagccttaggacaaaatatgcga
gttgcttttatgccttggaatggttacaattttgaagattctatcttaatttctgaaaga
gtagtacaagaagataggtttactactattcatatccaagaattgtcttgcttgtctagg
gatactaaattaggagcagaagaaattactgctgacattcctaatataggagaagcagct
cttgcgaaattagatgaatctggcattgtgtatatcggagcggaagttactgagggagat
atattagtcggtaaagtaactccaaaaggtgaaactcaactaacacccgaggagaaactt
ttaagagccattttcggtgaaaaagcttcagatgtaaaagattcatctcttcgagtacca
aatggattatctggaactgttattgatgttcaaatgtttacgagagatggtatagaaaaa
gatcaacgtggacttgcaatgggaaccatgcaagttaaaccaaacaaagatttatttgaa
gaatttaacattatggaggctgggttacttcgtcgtattaaagatattctaattgttaat
aaaatagaaattaataaaatagaaagtttatcgccggaaaagttgatgaaattcaaatta
acggataaagataagcaaaatgaattatcacaattagttacacaatataagttattaaaa
aatgaatttgataaaaagactaagactaatactaaacaatataaaataactcaaggtgat
gagttagctcctggagtaatgaaagttgttaaggtttatttagccgttaaaaggcagata
caaactggtgataaaatggctggacgtcacggaaataaaggagtgatatctaagataaat
cctattgaagatatgccttatgatgagcatggcgtacctgtagatattgtgttaaatcct
ttaggtgttccatcgcgcatgaacataggtcaaatattagaaactcatttaggaatggca
gccaagggcattggtaacaaaattaatgagatgttaaaaaaacaagaaaaagtttctaaa
ttacgagaattcatgcagaaggcttacaatatcggtaataatatccaacaaaaagtagat
ttaagtaatttttctgataatgaaatattacgtttggcaaaaaatttaaaagcaggaatg
ccaattgctacacctgtatttgatggtgcagaagaagaagaaattaaaaatttgcttgaa
ttaggtgatttgcctcagtctggtcaaataaaactttttgatgggcaaactggtgaacaa
tttgaacgacctgttactgttggttatatgtatatgttaaaactcaatcatttagtagat
gataaaatgcatgcccgttctacaggatcttatagtcttgttacccagcaaccattaggt
ggtaaagctcaatttggaggacagcgttttggagagatggaagtatgggcactagaagct
tatggtgcatcttacactttacaagaaatgctgactgtgaaatctgatgatgtaaatgga
cggactacaatgtataagaatattgttgatgggaatcatcggatggaccctggaatgcct
gaatcattcaatgtattattgaaagaaataagatcattaggtatcaatatagaactagaa
gagcaagaaaatcttgttacttaa
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