Candidatus Ishikawaella capsulata: ICMP_648
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Entry
ICMP_648 CDS
T04149
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ICMP_648 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
icp03400
]
ICMP_648 (mutM)
Enzymes [BR:
icp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ICMP_648 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ICMP_648 (mutM)
DNA repair and recombination proteins [BR:
icp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ICMP_648 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Alpha-amyl_C
PSMbeta
C1_2
Motif
Other DBs
NCBI-ProteinID:
BAH83476
UniProt:
C5WDS0
LinkDB
All DBs
Position
complement(728992..729801)
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AA seq
269 aa
AA seq
DB search
MPELPEVETYRRSIEFHLLGETLLDIRVYNPSLRWPFALEIYNLKNQMLLKVKRRGKYLL
LAFSKGWIIIHLGMSGNLRISNQSFPKDKHDHVELIMTNSKILRYNDQRRFGAWLWCIDI
NKTPLLDSLGPEPLSNNFNGNYLFKISRRKYTPIKPWLMDSKIVAGIGNIYANECLFMSR
IDPNRLIDNLNLVETIKLADSIKDILLSAIEKHGTTLQNFLQTDGMPGNFNNSLQVYKRD
GKPCYICQQPIKREKQRQRSTYWCTNCQI
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagtagaaacatatcgtagaagcattgaatttcatttattggga
gaaactcttttagatataagagtatataatccatctttacgttggccatttgctttagaa
atttataatttaaaaaatcaaatgctattaaaagtaaaaagacgtggtaaatatcttcta
ttagccttttctaaaggatggattataattcatttgggtatgtcaggtaatttacgtatt
tcaaaccaaagctttcctaaagataaacatgatcatgtagaattaatcatgactaatagt
aagattctgcgttataatgatcaacgtcgatttggagcttggttatggtgtattgatata
aacaaaacaccattattagattctttaggaccagaacctcttagtaataattttaatgga
aattatttgtttaaaatttctcgtagaaaatatactcctattaaaccctggttaatggat
tcaaaaatagtagcaggaataggaaatatttatgctaatgaatgtctctttatgtctcgt
attgatccaaatcgtttaatagacaatttgaatttagtagaaactatcaaattagctgat
agtattaaagatatactattaagtgccattgaaaaacacggcactactttacaaaatttt
ttacaaactgatggtatgccaggaaattttaataattcattacaagtttataaacgcgat
ggcaaaccttgttatatttgtcaacaaccaatcaaaagagaaaaacaaagacaaagaagc
acttattggtgcactaattgtcaaatttaa
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