Ideonella dechloratans: LRM40_05390
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Entry
LRM40_05390 CDS
T07737
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
idc
Ideonella dechloratans
Pathway
idc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRM40_05390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idc03019
]
LRM40_05390
Enzymes [BR:
idc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRM40_05390
Messenger RNA biogenesis [BR:
idc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRM40_05390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UFU11109
LinkDB
All DBs
Position
1151880..1153352
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AA seq
490 aa
AA seq
DB search
MNTVTTQGDTGTPVEVAPPPRFDTLPLDPKLLRAVADQGYATMTPIQAKAIPVVLSGRDV
MGAAQTGTGKTAAFSIPLLQKMLRHENASASPARHPVRAVVLAPTRELADQVAQNVKSYA
KHTNLRVAVVFGGVDMKPQAAELKAGVEVLIATPGRLLDHIEAKNCVLNQVEYVVLDEAD
RMLDIGFLPDLQRILSHLPKGNRQTLLFSATFSPEIKRLASSYLKDPELVEVARPNATAS
TVEQRFFSVSDDDKRRTILKLLRDRDIKQSIVFVNSKLGAARLARSFERDGLRTAALHGD
KSQDERLKSLAAFKAGEVDLLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGR
AGASGIAMTLVTREDARLVADIEKLIKKKIELEAIELDDDRPRRTSFRPREEREERSSSA
SAAPSAPRRSDSRASRDPFFDQPYDAGERAEPAAWERNAPSQPAAAAGRTSPNIRPKRKV
AALLGGGSKA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaataccgtcaccacgcaaggcgacaccggcaccccggtggaagtcgcccccccgccc
cgcttcgacaccctccctctggatcccaagctgctgcgcgcggtggccgatcagggctac
gcgacgatgacgcccatccaggccaaggccattccggtggtgctcagcggtcgggacgtg
atgggtgccgcccagacgggaacgggcaagacggcggccttttccatcccgctgctgcag
aagatgctgcggcacgagaacgccagcgcctcgccggcccgccacccggtgcgtgccgtg
gtgctggcgcccacccgcgagctggctgaccaggtggcgcagaacgtcaagtcctacgcc
aagcacaccaacctgcgggtggcggtggtgttcggcggtgtggacatgaagcctcaggcg
gccgagctcaaggccggtgtcgaggtgttgatcgccaccccggggcgcctgctggaccac
atcgaggccaagaactgcgtgctcaaccaagtcgagtacgtggtgctggacgaggcggac
cggatgctggacatcggcttcctgccggatctgcagcgcatcctgagccacctgcccaag
ggcaaccgccagaccctgctgttctcggccaccttctcgcccgagatcaagcgccttgcc
tccagctacctgaaggacccggagctggtcgaggtggcgcgtcccaatgcgacggcctcg
acggtggagcagcgtttcttcagtgtgtccgacgacgacaagcgacgcaccatcctgaag
ctgctgcgcgaccgtgacatcaagcagtccattgtgttcgtcaactccaagctgggcgcc
gcccgcctggcccgctccttcgagcgcgacggcctgcgcaccgcggccctgcatggcgac
aagtcccaggatgagcgcctgaagtccctggccgctttcaaggccggtgaggtggatctc
ctggtggccaccgacgtggccgcccgcggtctggacatcgccgacctgccggccgtcttc
aacttcgatgtgccgttcaatgcggaagactacgtccaccgcatcggtcgcaccggtcgt
gctggcgcgtcgggcatcgcgatgacgctggtcacccgcgaggatgcccgcctggtggcc
gacatcgagaagctgatcaagaagaagatcgagctcgaggcgatcgaactggatgacgac
cgtccccgccgtacctcgttccgtccgcgggaggagcgagaggagcggtcgtcgtcggca
tcggccgcgccgtcggcgccgcgtcgcagcgacagccgtgcatcgcgcgatcccttcttc
gaccagccctacgacgcgggcgaacgtgccgagccggcggcctgggagcgcaacgcgcct
tcccagcctgccgcagcggcagggcgcacctcgcccaacatccggcccaagcgcaaggtg
gccgccttgctgggcggcggctccaaggcctga
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