Ideonella dechloratans: LRM40_05515
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Entry
LRM40_05515 CDS
T07737
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
idc
Ideonella dechloratans
Pathway
idc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRM40_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idc03019
]
LRM40_05515
03009 Ribosome biogenesis [BR:
idc03009
]
LRM40_05515
Enzymes [BR:
idc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LRM40_05515
Messenger RNA biogenesis [BR:
idc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRM40_05515
Ribosome biogenesis [BR:
idc03009
]
Prokaryotic type
rRNA processing factors
LRM40_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
UFU11132
LinkDB
All DBs
Position
complement(1174684..1177503)
Genome browser
AA seq
939 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFKEGVSVKDAKIQDVIANGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEQREELKENLDQLEYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWDAIDTASKAGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYDQAQ
QFMNHVMPESAHRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVAV
DVNSARATRGGDIEETATRTNLEAADEIARQCRLRDLGGLIVVDFIDMEESKNRRDVEQR
LKDALRFDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRIIQEEALKENTAAVHVQVPVEVTSFLLNEKRQEISKIELKQRITVLLVPNKHLDTPN
YKLERLRHDDPRLENLQASYTMVQETDEEVSISRREKAKPKQEPVIKGVLPDQPAPVAPP
PAAPTPAPAPAAAAAPVPAPAPASGGGFFGWLKKLFGTEPAPAPVAKAEATPTPAAKTEG
ERGGRSGGNRRDRGERGERGERGNRGEAGGRNGGQRAEGGRGEGGNKPRREDNRGDRAER
GERAERGDRAERGERGGRGEGRRNAPERVEALDTGAQERKPRTELDVPANALADKVEGAE
AEGALADAERNGGRRRRRRGGRGRDGERTEGEMSQGAEGAVEGEAPAEATAADQLTAAVE
APAGEPVEGEREGRGRRNRRPRREQTDTQEEGSQAIPAAPLGEEAAAEAPSVEVHEAPAP
VEAPAAAPAPVAAAPVVVPAYTLALDELNAIAAGAGLSWVNSDAEKVRVVQEAIAAEPQP
VHVPRERPPVVVLDEGPLVLVETRKDLSQVTLPFDAPQS
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgcgacgcagccggaagagcggcgcctcgcgatcgtcgat
ggccagaaactgctcgacttcgagaccgagatcgagggccgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccgtccctggaagcctgcttcgtcgactac
ggcgaggaccgccacggcttcctgcccttcaaggaaatctcgcgccagtatttcaaggaa
ggcgtctcggtcaaggacgccaagatccaggacgtgatcgccaacggccaggaactcctg
gtccaggtcgaaaaggaagagcgtggcaacaagggcgccgccctgaccaccttcgtctcg
ctggccggccgctacctggtgctgatgcccaacaacccgcgtggcggtggcgtgagccgc
cgcatcgagggcgagcagcgtgaagagctgaaggaaaacctcgaccagctcgagtacccc
aagggcatgagcctgatcgcccgcaccgccggcatcggccgctcggccgccgagctgcag
tgggacctgaactacatgctcaagctctgggacgccatcgacacggcgtctaaggcgggc
aagggcgccttcctgatctaccaggaatcgtcgctggtgatccgcgcgatccgcgactac
ttcaccgccgacatcggcgagatcctgatcgacaccgacgacatctacgatcaggcccag
cagttcatgaaccacgtgatgccggaatcggcgcatcgcgtgaagcgctaccgggatgac
gccccgctgttctcgcgcttccagatcgagcaccagatcgagacggccttcagccgcacg
gtgaacctgccctcgggcggtgccatcgtgatcgaccacaccgaggccctggtggccgtg
gacgtgaactcggcgcgcgccacccgcggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagccgccgacgaaatcgcccgccagtgccgcctgcgcgacctgggcggcctg
atcgtggtcgacttcatcgacatggaggagagcaagaaccgccgcgacgtcgagcagcgt
ctgaaggacgccctgcgcttcgaccgcgcccgcgtgcagttcagctccatctccaagttc
ggcctgctggaactgagccgccagcgcctgcgcccggccctgtccgaaggcagccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacaccgaatcctcggcgctgcag
atcctgcgcatcatccaggaagaggccctgaaggaaaacaccgccgccgtgcatgtgcag
gtgccggtggaagtgacctccttcctgctcaacgagaagcgccaggagatcagcaagatc
gagctcaagcagcgcatcaccgtgctgctggtgcccaacaagcacctggacacgcccaac
tacaagctcgagcgcctgcgccacgacgacccgcgcctggagaacctgcaggccagctac
accatggtgcaggagaccgacgaagaggtctccatctcgcgccgcgagaaggccaagccc
aagcaagagccggtgatcaagggcgtgctgcccgaccagccggcccccgtggcgccgccg
cccgcggcccccacgcccgctccggctccggccgctgcagcagccccggtgcccgccccg
gcgccggccagcggtggtggcttcttcggctggctcaagaagctgttcggcaccgaaccg
gcgccggcacccgtcgccaaggccgaagccacccccaccccggccgccaagaccgagggt
gagcgcggcggccgcagcggcggcaaccgccgggaccgtggcgaacgcggtgaacgcggt
gagcgcggcaaccgtggtgaggccggtggccgcaacggcggccagcgcgccgaaggcggc
cgcggcgaaggcggcaacaagccgcgccgcgaggacaaccgcggcgaccgggctgagcgt
ggggaacgtgccgaacgcggagaccgtgccgagcgcggtgaacgtggcggccgcggtgaa
ggccgccgcaacgcccccgagcgcgtcgaggccctggacaccggcgcgcaggaacgcaag
ccgcgcaccgagctggacgtgccggccaacgccctggccgacaaggtcgagggcgcggag
gccgagggcgcgctggccgatgccgagcgcaacggtggccgccgccgccgccgccgtggt
ggccgtggccgcgatggcgagcgcaccgagggcgaaatgagccagggcgccgagggcgcg
gtcgagggcgaagccccggccgaagccaccgccgcggaccagctgaccgctgccgttgaa
gcgccggccggcgagccggtcgagggcgagcgcgagggccgtggccgtcgcaaccgccgc
ccccgccgcgagcagaccgacacccaggaagaaggcagccaggccatcccggccgcgccg
ctgggtgaagaggctgctgccgaggcgccgagcgtggaagtgcacgaagccccggccccg
gtcgaggcgccggccgccgctccggcccctgttgctgccgccccggtggtggtgccggcc
tacaccctggccctggacgagctcaacgccatcgcggcgggcgccggcctgagctgggtg
aactccgacgccgagaaggtgcgcgtcgttcaggaggccatcgccgccgagccccagccg
gtccatgtgccgcgcgagcggccgccggtggtcgtgctggacgaaggcccgctggtgctg
gtcgagacccgcaaggacctcagccaggtcaccctgcccttcgacgcaccccagtcctga
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