Ideonella dechloratans: LRM40_07740
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Entry
LRM40_07740 CDS
T07737
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
idc
Ideonella dechloratans
Pathway
idc03030
DNA replication
idc03410
Base excision repair
idc03420
Nucleotide excision repair
idc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRM40_07740 (polA)
03410 Base excision repair
LRM40_07740 (polA)
03420 Nucleotide excision repair
LRM40_07740 (polA)
03440 Homologous recombination
LRM40_07740 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
idc03032
]
LRM40_07740 (polA)
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_07740 (polA)
Enzymes [BR:
idc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LRM40_07740 (polA)
DNA replication proteins [BR:
idc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRM40_07740 (polA)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LRM40_07740 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRM40_07740 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
GP68
Motif
Other DBs
NCBI-ProteinID:
UFU11547
LinkDB
All DBs
Position
1654952..1657717
Genome browser
AA seq
921 aa
AA seq
DB search
MSEKILLLVDGSSYLYRAFHAMPDLRGPDGFPTGAIHGMVNMMNWLREQVPAEHAVCVFD
AKGPTFRDEWYPEYKAQRAPMPEDLRAQIEPIHEAVRLLGWPVLEVPGIEADDAIGTLAR
VGAESGHTVVISTGDKDLAQLVTPQVTLINTMAKPPERLDVAGVTEKFGVPPDRIIDYLT
LIGDTVDNVPGVPKVGPKTAVKWIQEHGSLDGVIAAAEQIKGVAGENLRATLGWLPTGRR
LITVKTDCDLGAQVPAWPALDALALRAPDQAGLVDFYTRYGFRSSLRALGQPVPAAAPAS
PAAAGEDPAGEVDPRPAPVLARDYQTLTSWEQLDAWIARLKAAPLVGLDTETDSLDPMRA
RIVGISFAVEPGRAAYVPTGHDYPGAPDQLPLDGVLARLRPWLEDAGAAKLGQNIKYDLH
VFENHGIRVQGYVHDTLLESYVLEAHKPHSLESLADRHLGRHGLSYEDLCGKGANQIPFS
QVDVERASTYSGEDSEMCVQVHETLWPQLQAEPGLRRVYAEIEMPTVAVLQRIERHGVLI
DPARLAAQSQQLAERMIALEQEAYAIAGQPFNMASPKQIGEILFNRLGLPVKKKTATGAP
STDEEVLQELAADYPLPAKLLEHRGLAKLKSTYTDKLPGMINPATGRVHTNYAQAVAVTG
RLSSNEPNLQNIPIRTPEGRRVREAFIAPPGHVIASADYSQIELRIMAHISGDPGLNKAF
AEGMDVHRATASEVFGIAPSEVTAEQRRYAKTINFGLIYGMGAFGLAQSLGIDQKAAKNY
IDRYFERFAGVKRYMEETKERARERGYVETEFGRRIVLPEIKGGSGPRRAGAERQAINAP
MQGTAADLIKLAMIAVQQALDAEGRATRMVMQVHDELVFEVPESEVDWLREAVPRLMAGV
ASFSVPLVAEVGFGPSWEAAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaagatcctgctgctggtcgatggttccagctacctctaccgtgcctttcac
gccatgcccgacctgcgggggcccgacggtttcccgaccggggccatccacggcatggtc
aacatgatgaactggctgcgcgagcaggtgccggccgagcacgccgtgtgcgtgttcgac
gccaagggccccaccttccgcgatgagtggtatcccgagtacaaggcccagcgagccccc
atgcccgaggacctgcgggcccagatcgagcccatccacgaggcggtgcgcctgctgggc
tggccggtgctggaggtgcccggcatcgaggccgatgacgccattggcacgctggcccgg
gtgggcgccgaaagcggccacaccgtggtgatctccaccggcgacaaggacctggcccag
ctggtgacgccccaggtgaccctgatcaacaccatggccaagccgcccgagcgcctggac
gtggcgggggtcaccgagaagttcggcgtgccgccggaccgcatcatcgactacctgacc
ctgatcggcgacacggtggacaacgtgcccggcgtgcccaaggtcgggcccaagaccgcg
gtcaagtggatccaggaacacggctcgctggacggcgtgatcgccgcggccgagcagatc
aagggtgtggcgggcgagaacctgcgcgccaccctgggctggctgcccacgggccgccgc
ctcatcaccgtcaagaccgactgcgacctgggtgcccaggtgccggcctggccggcgctg
gacgccctggccctgcgcgcgcccgaccaggccggcctggtggacttctacacccgctac
ggttttcgcagcagtctgcgggccctgggtcagccggtgcccgccgccgccccggcgagc
cctgccgccgcgggcgaagaccccgcaggagaggttgacccgcgcccggcgcccgtgctg
gcacgcgactaccagaccctcaccagctgggaacagctggacgcctggatcgcccgcctg
aaggccgcacctctggtgggtctggacaccgagaccgattcgctggatccgatgcgtgcg
cgcatcgtcggcatcagcttcgcggtggagcccggccgggccgcctatgtgcccaccggc
catgactaccccggcgcgccggaccagctgccgctggatggggtgctggcgcgcctgcgc
ccctggctggaagatgccggcgcggccaagctgggccagaacatcaagtacgacctgcat
gtgttcgagaaccacggcatccgggtgcagggctatgtgcatgacacgctgctggaaagc
tatgtgctcgaggcccacaagccgcacagcctggagagcctggccgaccgccacctgggc
cgccacggcctgagctacgaggacctgtgcggcaagggcgccaaccagattcccttctcg
caggtggacgtggagcgcgccagcacctacagcggcgaggacagcgagatgtgcgtgcag
gtgcatgagacgctgtggccgcagctgcaggccgagccaggcctgcggcgcgtttacgct
gagatcgagatgcccacggtggcggtgctgcagcgcatcgagcgccatggcgtgctgatc
gacccggcccggctggcggcccagagccagcagctggccgagcgcatgatcgcgctggag
caggaggcctacgccatcgccggtcagcccttcaacatggccagccccaaacagatcggc
gagatcctgttcaaccgcctgggcctgccggtcaagaagaagaccgccaccggcgccccg
tcgactgacgaagaggtgctgcaggagctggcggccgactacccgctgccggccaagctg
ctggaacaccgcggcctggccaagctcaagagcacctacaccgacaagctgcccggcatg
atcaaccccgccaccggccgggtgcacaccaactacgcgcaggcggtggccgtcaccggg
cggctgtccagcaacgagcccaacctgcagaacatcccgatccgcacgcccgagggtcgg
cgcgtgcgcgaggccttcatcgccccgcccggccatgtgatcgccagcgccgactactcg
cagatcgagctgcgcatcatggcccacatcagcggcgacccgggtctgaacaaggccttc
gccgagggcatggacgtgcaccgcgccaccgccagcgaggtcttcggcatcgccccgtcg
gaggtcacggccgagcagcgccgctacgccaagaccatcaacttcggcctgatctacggc
atgggcgccttcggcctggcgcagagcctgggcatcgaccagaaggcggccaagaactac
atcgaccgctacttcgagcgctttgccggcgtgaagcgctacatggaggagaccaaggag
cgggcccgcgagcgcggctatgtggagaccgagttcggacggcgcatcgtgctgccggag
atcaagggcggcagcggcccgcgccgtgccggcgccgagcgccaggccatcaacgcgccg
atgcagggcaccgcggccgacctgatcaagctggcgatgatcgcggtgcagcaggccctg
gacgccgagggccgcgccacccgcatggtgatgcaggtgcacgacgaactggtcttcgag
gtgcccgagtccgaggtggactggctgcgcgaggccgtgccccgcctgatggccggcgtg
gcgtccttcagcgtgcccctggtggccgaggtgggcttcgggccgagctgggaagcagcg
cactga
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