Ideonella dechloratans: LRM40_09075
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Entry
LRM40_09075 CDS
T07737
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
idc
Ideonella dechloratans
Pathway
idc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LRM40_09075 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_09075 (recB)
Enzymes [BR:
idc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LRM40_09075 (recB)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LRM40_09075 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
UFU08508
LinkDB
All DBs
Position
1947064..1950765
Genome browser
AA seq
1233 aa
AA seq
DB search
MSEPTSQRLDPLNFPLHGSQLIEASAGTGKTWTIAALYLRLVLGHGGEQACPRGPLRPDQ
ILVMTFTRVATRELSDRIRARLLEAAQVFRAGPQALPEGDEFLAALLASCPGETERQQAA
WRLALAAEGMDDAAIHTIDAWCQRMLREHAFDSGQLFEEELVPDEAQLLTQAAHDHWRQQ
VYPLRGELLDEVLALWPDVTALQADAAALLDLPRPATAGQGRLAEVVQQARQARADALAR
LRAGWAERAEDLRAWLLDQVADKGAWNGAKLKPANFGKWLDSLAAWGRGGPDAPDQPDLK
TGWTRLTVAGLVDARKPGLPPPDWPPALAELEALPAALAGLPSVRDTLRLHAAARIAARL
AQLKRQAAQFGFADLQQRLLQALDGPRGEALRQRIVGQTPVALIDEFQDTSALQYALFDR
LYRVADNAPDTALLLIGDPKQSIYRFRGADIGSYLRARQATEGRHHMLGTNFRSTQALVA
AVNHGFAQAEARPGEGAFGYRSAAGNPVPFEPVGARGRAERLVHDGEGVPALTLVHDLVP
RAFEQHLRPMAERCAEQIVQWLNGPQTGFERTGQGVQRLRPADIAVLVRSGREARAVRAA
LRRRQVASVYLSDRESVLASDEAADLLRWLQAVAQPQDTRLVRAALATRTLGLPLGTLQQ
LADDDEAFDPYAELMRQLQALWQAQGVLPLVRQTVHRLDLGARWLGQPEGERRLTNLLHL
AELLQAQSARLEGEQALIRWLAEAIDDARQGRGGGGDEQIVRLESDADLVQVITVHKSKG
LEYPVVCLPFATSLRLADRRSTPFVLREDAAGQPRLVLAPDDEDLAWAERERLREDLRLF
YVALTRARHALWLGFTALTIGNSPACQTHRSAAGWLLAGPEATTPEALAQALAGWAAGCP
DIALQPAGPAVGLTPLAPRETPLPLAEAPVYAGQFDRRWGIGSFSALVRDLGGVPSLGVT
QAPRPADDEPDADPAPGAMPRAAVAEGAPAWHRFERGALAGNFLHDQLEWLAQEGFARAD
DPMVAEALARRISRTGREAAAPDVVHWLQRLLRTPLPGLGAPLAELQRLLPEMEFWLPAE
KLPVAELDALCQAHLLPGQPRPALTARELHGMLMGFADLVFEHDGRYWVLDYKSNQLGPD
GRAYSPEALDAAMLHHRYDVQAALYLLALHRLLRARLGQAYRPEAQLGGALYLFLRGIDG
PTRGTVHLPPPLALLDALDAWLGGPQGVEATTC
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacccaccagccaacgcctggaccctttgaattttccgttgcacggcagccag
ctgatcgaggccagcgccggcaccggcaagacctggaccatcgccgcgctctacctgcgc
ctggtgctgggccatggcggcgaacaggcctgcccgcgcgggccgctgcggcccgaccag
atcctggtcatgaccttcacccgcgtggccacgcgcgagctgtcggaccgcatccgcgcc
cgcctgctggaggccgcccaggtcttccgcgccgggccgcaggccctgcctgaaggcgac
gagttccttgccgcgctgctggcgtcctgccccggcgagaccgaacggcagcaggccgcc
tggcgcctggccctggcggccgagggcatggacgacgccgccatccacaccatcgacgcc
tggtgccagcgcatgctgcgcgagcacgccttcgacagcggccagctgttcgaggaagaa
ctggtgcccgacgaggcccagctgctgacccaggccgcccacgaccactggcgccagcag
gtctacccactgcgcggcgaactgctggacgaggtgctggccctgtggcccgatgtgacg
gccctgcaggccgatgccgcggccctgctggacctgccgcggccggccacggccgggcag
gggcggctggccgaggtggtgcagcaggcccgccaggcccgcgccgacgccctggcccgg
ctgcgtgccggctgggccgagcgggccgaggacctgcgcgcctggctgctggaccaggtg
gccgacaagggcgcctggaacggcgccaagctcaagccggccaacttcggcaaatggttg
gacagcctggcggcctggggccgcggcgggccggacgcccccgaccagcctgacctgaaa
accggctggacccgcctgaccgtggccggcctggtggacgcccgcaagcccggcctgccc
ccgccggactggccccccgcgctggccgaactggaggctttgcccgcggccctggccggc
ctgccgtcggtgcgcgacaccctgcgcctgcatgccgcggcccgcatcgccgcgcgcctg
gcccagctcaagcgccaggccgcccagttcggctttgccgacctgcagcagcgcctgctg
caggccctggacggcccgcgtggcgaggcgctgcgccaacgcatcgtgggccagaccccg
gtggccctgatcgacgaattccaggacacctcggccctgcagtacgcgctgttcgaccgg
ctctaccgcgtggcggacaacgcgcccgacaccgcgctgctgctgatcggcgaccccaag
caatccatctaccgcttccggggtgcggacatcggcagctacttgcgggcccgtcaggcc
accgagggccggcaccacatgctgggcaccaacttccgctccacccaggccctggtggcc
gcggtcaaccacggcttcgcccaggccgaggcccggccgggggagggcgctttcggctac
cgcagcgcggccggcaacccggtgcccttcgagcccgtgggcgcccggggccgggccgaa
cgcttggtgcatgacggcgagggggtgccggcgctgaccctggtgcacgacctggtcccg
cgcgccttcgagcagcacctgcgccccatggccgagcgctgcgccgagcagatcgtgcaa
tggctcaacgggccgcagacgggcttcgagcgcaccggtcagggcgtacagcgcctgcgc
ccggccgacatcgcggtgctggtgcgcagcgggcgcgaggcgcgggccgtgcgggccgcg
ctgcgccgccggcaggtggcctcggtgtacctgtctgaccgcgaatcggtgctggccagc
gacgaggctgccgacctgctgcgctggctgcaggccgtggcccaaccgcaggacacccgg
ctggtgcgcgccgccctggccacccgcacgctgggcctgccgctgggcaccttgcagcag
ctggccgacgacgacgaggccttcgacccctacgctgagctgatgcgacagctgcaggcc
ctgtggcaggcgcagggcgtgctgcccctggtgcgccagacggtgcaccgcctggacctg
ggcgcccgctggctgggccagcccgagggcgagcgtcgcctgaccaacctgctgcacctg
gccgagctgctgcaggcccagagtgcgcggctggagggcgagcaggccctgatccgctgg
ctggccgaggccatcgacgacgcccggcagggccgtggcggtggcggcgacgaacagatc
gtgcgcctggaaagcgatgccgacctggtgcaggtcatcaccgtgcacaagagcaagggc
ctggagtacccggtggtctgcctgccctttgccaccagcctgcgcctggccgaccggcgc
agcacacccttcgtgctgcgcgaggacgcggccggccagccccgcctggtgttggccccg
gatgacgaagacctggcctgggccgagcgcgagcgcctgcgcgaggacctgcgcctgttc
tatgtggccctgacccgggcccgccatgccctgtggctgggcttcaccgcgctgaccatc
ggcaacagcccggcctgccagacccaccgcagcgcggccggctggctgctggccggcccc
gaggccaccacgcccgaggccctggcccaggcgctggccggctgggccgccggctgcccg
gacatcgccctgcagccggctggcccggcggtgggcctgaccccgctggccccgcgcgag
acaccgctgcccctggccgaggccccggtctacgccggccagttcgaccgccgctggggc
atcggcagcttttcggccctggtgcgcgacctgggcggcgtgcccagcctgggcgtcacc
caggccccgcggccggccgacgatgagcccgacgccgacccggcgcccggcgccatgccg
cgcgccgccgtggcggaaggcgcgccggcctggcaccgcttcgaacgcggggccctggcg
ggcaacttcctgcacgaccagctggaatggctggcccaggagggctttgcccgcgccgac
gatccgatggtggccgaggccctggcccgccgcatcagccgcaccggccgtgaggcggcc
gcgccggacgtggtgcactggctgcagcgcctgctgcgcacgccgctgccgggcctgggt
gcgccgctggccgagctgcagcgcctgctgcccgagatggagttctggctgccggcagag
aagctgccggtggccgagctggacgcgctgtgccaagcccacctgctgcccggccagccc
cgcccggccctgaccgcgcgggagctgcacggcatgctgatgggctttgccgacctggtg
ttcgagcacgatggccgctactgggtgctggactacaagagcaaccaactggggcccgac
ggccgcgcctacagccccgaggcgctggacgcggccatgctgcaccaccgctacgacgtg
caggccgcgctctacctgctggccctgcaccgcctgctgcgcgcccgcctgggccaggcc
taccggcccgaggcccagctgggcggcgcgctctacctcttcctgcgcggcatcgacggg
ccgacccgcggcaccgtgcacctgccgccgcccctggccctgctggacgccctggatgcc
tggctgggcgggccccagggcgtggaggccacgacatgctga
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