Ideonella dechloratans: LRM40_09080
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Entry
LRM40_09080 CDS
T07737
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
idc
Ideonella dechloratans
Pathway
idc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LRM40_09080 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_09080 (recD)
Enzymes [BR:
idc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LRM40_09080 (recD)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LRM40_09080 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
SH3_13
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
DEAD
nSTAND3
AAA_28
Mg_chelatase
ATPase
HrpJ
ResIII
Motif
Other DBs
NCBI-ProteinID:
UFU08509
LinkDB
All DBs
Position
1950759..1952861
Genome browser
AA seq
700 aa
AA seq
DB search
MLSNDLTRSLFDDDEGAQATPPGLVTGPADTLATLRQWVAAGWLRRLDGALAALLAELDP
DAPPALLLCAAALAHLEGHGHTGLDLRELMAQPSRLLAWPTEGLAAWDAAWDTAWQARGT
AASLVALQQQLTRSTTVRATEAAPDTGQPLVLEGEMLYLRRYWHHERAVAEAVRQRCGDA
SAQALQPGALAQARAWLDRLFPPRKGVDWQKAACALALRGRLTVITGGPGTGKTYTAARL
LALLLAQAPDPTQLRVALAAPTGKAAARLKQAIDSALGQLEAGLDGLLDLRGLTERIGAA
RTLHALLGARPDRRAFRHDARHPLELDVLIVDEASMVHLEMMAAVLAALPPGARLVLLGD
KDQLASVEAGAVLGDLCRDAVAGRYDAATRAHLAASAGVQLPAEYADDAGPRLAQHTVML
RESRRFGGAIGQLAQAVNAGDRAAVQTLLTTRPRAEDPAIRALQGGQPEALLSLACAGRD
GAPGGYGAYVALLKDRPAPGEGEPAQRAHEDWVRRVLTAFDRFRLLCAVRDGAWGTEALN
RAVPQALARLGLRPQGEWYMGRPVMVTRNDPALGVFNGDIGMVLPGARSEALRAWFLDGQ
TLRSVGVGRLAHVETAFAMTVHKSQGSEFWHTVLVLPEQAGSLLSRELVYTGITRAREAF
TLVTARAGALEEAVQQPTRRVSGLLRMLDPGAARPGDSLP
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcaacgacctgacgcgatcgctcttcgacgacgatgaaggggcgcaggccacg
ccgcctggcctggtcaccggccccgccgataccctggccacgctgcgccagtgggtggct
gcgggctggctgcgccggctcgatggcgccctggcggccctgctggccgagctggacccc
gacgccccgcccgcgctgctgctttgcgccgccgccctggcccatctggaagggcatggc
cacaccggcctggacctgcgcgagctgatggcccagccgtcccgcctgctggcctggccc
accgagggcctggcggcctgggatgccgcctgggacacggcctggcaagcccgagggacc
gcggcctcgctggtcgcgctgcagcagcagctgacccgcagcaccacggtgcgggccacc
gaggccgcgcccgacaccggccaaccgctggtgctggaaggcgagatgctctacctgcgg
cgctattggcaccacgaacgggcggtggccgaggcggtgcgccagcgctgcggtgatgcg
tcggcccaggcgctgcagcccggcgcgctggcccaggcgcgggcctggctggaccgcctg
ttcccgccccgcaagggcgtggactggcagaaggccgcctgcgccctggccctgcgcggc
cggctgaccgtgatcaccggcgggccgggcaccggcaaaacctacaccgccgcccggttg
ctggccctgctgctggcccaggcgccggacccgacccagctgcgcgtggccctggccgcg
cccaccggcaaggccgcggcccggctcaagcaggccatcgacagcgccctggggcagctg
gaagccggcctggacgggctgctcgacctgcggggcctgaccgagcgcatcggcgccgcg
cgcaccctgcacgcgctgctgggcgccaggccggacaggcgcgccttccgccacgatgcc
cgccatccgctggagctggacgtgctgatcgtggacgaggcctccatggtccacctggag
atgatggccgccgtgctggccgcgctgccgcccggcgcccggctggtgctgctgggcgac
aaggaccagctggcgtcggtcgaggccggggcggtgctgggcgacctgtgccgcgatgcg
gtggccggccgttacgacgcggccacccgcgcccacctggccgccagcgccggcgtgcag
ctgccggccgagtacgccgacgatgccggcccgcgcctggcccagcacaccgtgatgctg
cgggagagccggcgcttcggcggcgccatcggccagctggcccaggccgtcaacgccggg
gaccgtgcggccgtgcagaccttgctgaccacgcgcccccgggccgaggacccggcgatc
cgcgccctgcagggcgggcagcccgaggcgctgctgtcattggcctgtgccggccgggac
ggcgcgcccgggggctatggcgcctatgtggccctgttgaaggatcggcccgcccccggt
gagggcgagccggcacagcgggcgcatgaagactgggtgcgccgggtgctcacggccttc
gaccgctttcgcctgctgtgcgccgtgcgcgacggggcctggggcaccgaagccctgaac
cgcgccgtgccccaggccctggcccgcctgggcctgcgtccgcaaggcgagtggtacatg
ggccggccggtgatggtcacccgcaacgaccccgccctgggcgtgttcaacggcgacatc
ggcatggtgctgccgggggcgcgcagcgaggcgttgcgcgcctggttcctggatgggcag
acgctgcgctcggtgggcgtgggccgtctggcccatgtcgagacggcattcgccatgacg
gtgcacaagagccagggttcggagttctggcacaccgttctggtgctgcccgagcaggcc
ggctcgctgctgagccgcgaactggtctacaccggcatcacccgcgcccgcgaggccttc
acgctggtgacggcccgcgccggggccctggaggaggcggtgcagcagccgacccggcgg
gtcagtggtctgcttcggatgctggacccgggcgcagctcgtccaggcgatagccttcct
tga
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