KEGG   Ideonella dechloratans: LRM40_09220
Entry
LRM40_09220       CDS       T07737                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
idc  Ideonella dechloratans
Pathway
idc00010  Glycolysis / Gluconeogenesis
idc00020  Citrate cycle (TCA cycle)
idc00260  Glycine, serine and threonine metabolism
idc00280  Valine, leucine and isoleucine degradation
idc00310  Lysine degradation
idc00380  Tryptophan metabolism
idc00620  Pyruvate metabolism
idc00630  Glyoxylate and dicarboxylate metabolism
idc00640  Propanoate metabolism
idc00670  One carbon pool by folate
idc00785  Lipoic acid metabolism
idc01100  Metabolic pathways
idc01110  Biosynthesis of secondary metabolites
idc01120  Microbial metabolism in diverse environments
idc01200  Carbon metabolism
idc01210  2-Oxocarboxylic acid metabolism
idc01240  Biosynthesis of cofactors
Module
idc_M00009  Citrate cycle (TCA cycle, Krebs cycle)
idc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
idc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
idc_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:idc00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    LRM40_09220 (lpdA)
   00020 Citrate cycle (TCA cycle)
    LRM40_09220 (lpdA)
   00620 Pyruvate metabolism
    LRM40_09220 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    LRM40_09220 (lpdA)
   00640 Propanoate metabolism
    LRM40_09220 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    LRM40_09220 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    LRM40_09220 (lpdA)
   00310 Lysine degradation
    LRM40_09220 (lpdA)
   00380 Tryptophan metabolism
    LRM40_09220 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    LRM40_09220 (lpdA)
   00670 One carbon pool by folate
    LRM40_09220 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:idc04147]
    LRM40_09220 (lpdA)
Enzymes [BR:idc01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     LRM40_09220 (lpdA)
Exosome [BR:idc04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   LRM40_09220 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Biotin_lipoyl Pyr_redox FAD_oxidored GIDA Biotin_lipoyl_2 FAD_binding_2 AlaDh_PNT_C NAD_binding_8 FAD_binding_3 Pyr_redox_3 Thi4 DAO GCV_H HI0933_like HlyD_D23 DEC-1_N Lycopene_cycl RnfC_N
Other DBs
NCBI-ProteinID: UFU08532
LinkDB
Position
1984157..1985980
AA seq 607 aa
MALIDVRVPDIGDFKDVAIIEVLVKPGDTVKAEQSLITVESDKASMEIPSSHAGVVKELK
VALGDKVNQGSVILTLEAAEAAAAAPAAPAQAPVPAAAAPAPAPVATPAAAGSYAGPVDL
SCDVLVLGGGPGGYSAAFRAADLGLNVVVVERYPTLGGVCLNVGCIPSKALLHVAAVMDE
VKHLADAGIAYAEPAVDIDKLRGHKEKVVGKLTGGLGAMAKMRKVTIVRGYGSFIDPYHL
QVDETSGPGQDRSGGRKVVKFGHAIIAAGSQAVRLPFFPVDERIVDSTGALNLKSVPKKM
LIVGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKVWQKMNAPRFDNIMLKTK
TVGAEATPEGIKVKFEAADGTTSEQVYDLVLQAVGRTPNGKKIGAEAAGVAVGERGFIPV
DAQLRTNVPHIFAIGDVVGQPMLAHKAVHEGHVAAEVIAGTVKGDATLARSQFDARVIPS
VAYTDPEVAWVGLTEDQAKAQGIKVKKGLFPWTASGRAIANGRDEGFTKLLFDDSPEAHG
HGRILGGGIVGTHAGDMIGEIALAIEMGADAVDIGATIHPHPTLGESLGMAAEVAHGSCT
DLPPQRR
NT seq 1824 nt   +upstreamnt  +downstreamnt
atggcattgatcgacgtgcgtgtgccggacatcggcgatttcaaggacgtggccatcatc
gaggtgctggtcaagccgggcgacacggtgaaggccgaacagagcctgatcaccgtcgag
tccgacaaggcctcgatggagatccccagcagccatgccggggtggtcaaggaactgaag
gtggccctgggcgacaaggtcaaccaaggcagcgtgatcctgacgctggaggcagccgaa
gccgctgcggcggcaccagccgctcccgcgcaggcccccgtgcctgccgctgcggcaccg
gcccccgcgccggtggcgacccctgccgcggccggcagctacgccggcccggtggatctg
agctgcgacgtgctggtgctgggcggtggccctggcggctattccgccgccttccgggcc
gccgacctgggcctgaacgtggtggtggtcgagcgctacccgaccctgggcggcgtctgc
ctgaacgtgggctgcatcccgtccaaggcgctgctgcacgtggccgcggtgatggacgag
gtcaagcacctggctgacgcgggcattgcctacgccgagccggcggtggacatcgacaag
ctgcgcggccacaaggaaaaggtggtcggcaagctgaccggcggcctgggcgccatggcc
aagatgcgcaaggtcaccatcgtgcgcggctacggcagcttcatcgacccctaccacctg
caggtggacgagaccagcggccccgggcaggaccgcagtggcggccgcaaggtggtcaag
ttcggccacgccatcatcgccgcgggttcgcaggccgtgcgtctgccgttcttcccggtc
gatgaacgcatcgtggactccaccggcgcgctgaacctgaagtccgtgccgaagaagatg
ctgatcgtcggcggcggcatcatcggcctggaaatgggcaccgtctactccaccctgggc
gcccgcctggacgtggtggagatgctggacggcctgatgcagggggcggaccgcgacctg
gtcaaggtgtggcagaagatgaacgcgccgcgcttcgacaacatcatgttgaagaccaag
acggtgggggccgaggccacgcccgagggcatcaaggtgaagttcgaggccgccgacggc
acgaccagcgagcaggtctacgacctggtgctgcaggccgtgggccgcacgcccaatggc
aagaagatcggtgccgaggccgctggcgtggccgtgggtgagcgcggcttcatcccggtg
gatgcccagctgcgcaccaacgtgccgcacatcttcgccatcggcgacgtggtgggccag
cccatgctggcgcacaaggcggtgcacgagggccatgtggcggccgaggtcatcgccggc
acggtcaagggcgacgccaccctggcccgcagccagttcgatgcccgcgtgatccccagc
gtggcctacaccgatcccgaggtggcctgggtgggcctgaccgaggaccaggccaaggcc
cagggcatcaaggtcaagaagggcctgttcccctggacggcctcgggccgcgccatcgcc
aacggtcgcgacgagggcttcaccaagctgctgttcgacgattcgcccgaggcccatggc
cacggtcgcatcctggggggcggcatcgtgggcactcatgcgggcgacatgatcggcgag
atcgcgctggccatcgagatgggcgcggacgcagtggacatcggcgccaccatccacccg
caccccacgctgggcgaaagcctgggcatggcggccgaggtggcgcacggcagctgcacc
gatctgccgccccagcggcgctga

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