Ideonella dechloratans: LRM40_10005
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Entry
LRM40_10005 CDS
T07737
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
idc
Ideonella dechloratans
Pathway
idc03030
DNA replication
idc03430
Mismatch repair
idc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRM40_10005 (dnaX)
03430 Mismatch repair
LRM40_10005 (dnaX)
03440 Homologous recombination
LRM40_10005 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
idc03032
]
LRM40_10005 (dnaX)
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_10005 (dnaX)
Enzymes [BR:
idc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LRM40_10005 (dnaX)
DNA replication proteins [BR:
idc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LRM40_10005 (dnaX)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LRM40_10005 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
DUF3646
AAA_22
RuvB_N
DNA_pol3_tau_5
AAA_14
AAA_16
ResIII
AAA_18
AAA_5
nSTAND3
AAA_2
Herpes_Helicase
AAA_19
Rad17
AAA_28
TsaE
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
UFU08672
LinkDB
All DBs
Position
complement(2147486..2149540)
Genome browser
AA seq
684 aa
AA seq
DB search
MSYVVLARKYRPRSFEEMVGQDHVVRALTHALEQGRLHHAYLFTGTRGIGKTTVSRILAK
SLNCVGPDGQGGVTAHPCGVCSACREIDADRYIDYVELDAASNRSIDEIRELIERAAYKP
TVGRFKVFMIDEAHQLTKDAFNALLKTLEEPPEYLKFVLATTDPEKMLPTVLSRCLQFNL
RPMAPQTVAEHLTRVLEAEQVPVEPGALRLLSRAARGSMRDALSLTDQAIAYGGGQLQEA
SVRAMLGTVDRRHAERLVQALAARDGRAVLAEVDGLRDRGLSAAGTLEELARLLQQMAVE
QAVPGALDETDPDTEAGRRLAPALAPDETQLLYSMAVHGRAELPLAPDEYAGLAMVLLRF
LAFPSAEGGAARSAAPPSRSSAPLVAPAAAASVAVPVVSPRGDATAARAPAAASSHTVAP
AVPAPPVAPEAVRPAPAPVAAAAPVPAPRVPVTPAAPPQASAPVRAASARPQPPVAADEP
PPWMDEAPFEGEVVARPAARSPRSADPEPEPAPHDVPDDPQDAAPWPDEAATAPAPAMPA
RRALPEVARTPLGDRWAEAVAGMQATGSLVALVRELALQSELVAIAPAADGQGEQWQLRV
EREPLRAPPLVDKLQKALQAWSGKTIRLEAVAGVAQDSPALRETERLARRQREAEEVIQS
DPLVQSLLAQFSTARIVPGSIKPV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagttatgtcgtcctggcccgcaagtaccggccccgcagcttcgaggagatggtgggg
caggaccatgtcgtgcgtgcgctcacccatgcgctggagcaggggcggctgcaccatgcc
tacctgttcaccggcacgcgcggcatcggcaagacgaccgtctcgcgcatcctggccaag
agcctgaactgcgtcggcccggacgggcagggtggtgtcacggcccatccctgcggcgtg
tgctccgcctgccgggagatcgatgccgaccgctacatcgactacgtggagctggacgcg
gcctccaaccgcagcatcgacgagatccgcgagctgatcgagcgggcagcctacaagccc
accgtcggccgcttcaaggtcttcatgatcgacgaggcgcaccagctcaccaaggacgcc
ttcaacgccctgctcaagacactggaagagccgcccgagtacctgaagttcgtgctggcc
acgaccgaccccgagaagatgctgcccacggtgctgagccgctgcctgcagttcaacctg
cggccgatggcgccgcagacggtggccgagcacctcacgcgggtgctggaggccgagcag
gtgccggtggagcccggcgccttgcggctgctgtcgcgggcggcgcgcggttccatgcgc
gacgcgctgtcactgaccgaccaggccatcgcctatggcggcggccagctgcaggaggcc
agcgtgcgcgccatgctgggcacggtggaccggcgccacgccgagcgcctggtgcaggcc
ctggcggcccgagatgggcgggcggtgctggccgaggtggatggcctgcgcgaccgcggt
ctgtcggccgctggcacgctggaagagctggcgcgcctgctgcagcagatggcggtggaa
caggccgtgccaggcgccctggacgagaccgatcccgacaccgaggcggggcgccgcctg
gccccggccctggcgcctgacgaaacccagctgctctacagcatggcggtacacggccgg
gccgagttgcccctggccccggacgaatacgccggcctggccatggtgctgctgcgcttc
ctggccttcccctcggccgagggtggcgcagcgcgcagcgccgcaccgccgagccgatcc
agcgcgccgctggtggccccggcagccgcggcctcggtggccgtgccggtggtgtccccc
cggggggatgccactgccgcacgggccccagcggctgcttccagccacaccgtggcgccg
gccgtgcccgcgccgccggtggcgccggaggcggtccgtcccgcgccagccccggtggcc
gctgccgcgcctgtgccggccccgcgcgtgccggtgacgcccgccgcgcctccccaggca
tcggcgcccgtgcgagccgcgtccgcacgaccgcagccgccggtggccgccgacgagccg
cccccctggatggacgaggcgccgttcgagggcgaggtcgtggcccggccggcggcccgc
agcccgcgcagtgctgatcccgagcccgagcctgcaccgcacgacgtcccggacgatccg
caggacgccgcaccctggcccgacgaggccgccactgcgccggcgcccgccatgccggcg
cgccgggcgctgcccgaggtggcgcgcacgccgctgggcgaccgctgggccgaggccgtg
gccggcatgcaggccacgggcagcctggtggccttggtgcgtgaattggccctgcagtcc
gagctggtggccatcgcgccggctgccgatgggcagggcgagcagtggcagctgcgtgtg
gagcgcgagccgctgcgtgcgccgcccctggtggacaagctgcagaaggccctgcaggcc
tggtccggaaagaccatccgcctggaggcggtggccggtgtggcccaggattcgcccgcg
ctgcgcgagaccgagcgcctggcccgccgccagcgcgaggccgaagaagtgatccaatcc
gatcccctggtgcagtcgctgctggcgcagttcagcacggcgcgcatcgttcccggctcg
atcaagccggtctga
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