Ideonella dechloratans: LRM40_12615
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Entry
LRM40_12615 CDS
T07737
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
idc
Ideonella dechloratans
Pathway
idc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRM40_12615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idc03019
]
LRM40_12615
Enzymes [BR:
idc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRM40_12615
Messenger RNA biogenesis [BR:
idc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRM40_12615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UFU09148
LinkDB
All DBs
Position
2694980..2696404
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AA seq
474 aa
AA seq
DB search
MSFDSLGLAEPIVRAVREQGYTQPTPIQAQAIPAVMKGGDLMAGAQTGTGKTAGFTLPTL
HRLAAAGPKRDARGRVAIRALILTPTRELAAQVEESVRQYGKYLPLTSMVMFGGVGMQPQ
IDRLRKGVDILVATPGRLLDHHQQGTLDLSHVEIFILDEADRMLDMGFIHDIKKVLAIVP
KQKQSLLFSATFSDDIKALADRLLNQPALIEVARRNQTNDAIAQKVHPVGRERKKELLAH
LIRQGNWHQVLVFTRMKHGANRLAEFLNKEDISAMAIHGNKSQGARTKALSEFKAGTLQV
LVATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEEQFLR
DIEKLIKREIPKELVPGFEPPAGEKAEPIVLGRRMTIGVGANRGGGGGGRGGSGRPGGDG
RGRPGQPGHGNPARSAGQGQRQGQGQGQRQGGPDSGRRDRPAAPGGARPPRTGR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgattctctcggcctggccgaaccgatcgttcgcgccgtgcgcgaacagggc
tatacccaacccacccccatccaggcgcaagccattcccgccgtcatgaagggcggcgac
ctgatggccggcgcccagaccggcaccggcaagaccgccggcttcaccctgcccaccctg
caccgcctggccgcggccggccccaagcgcgatgcgcgcggccgcgtggccatccgcgcc
ctgatcctcacccccacccgcgaactggccgcccaggtcgaggaaagcgtgcgccagtac
ggcaagtacctgccgctgaccagcatggtgatgttcggcggcgtgggcatgcagccccag
atcgaccgcctgcgcaagggcgtggacatcctggtggccaccccgggccgcctgctggac
caccaccagcaaggcacgctggacctgtcccacgtcgagatcttcatcctcgacgaggcc
gaccgcatgctggacatgggcttcatccatgacatcaagaaggtcctggccatcgtgccc
aagcagaagcagagcctgctgttctcggccaccttcagcgacgacatcaaggccctggcc
gaccggttgctgaaccagccggccctgatcgaggtggcccgccgcaaccagaccaacgac
gccatcgcccagaaggtccacccggtgggccgcgagcgcaagaaggagttgctggcccac
ctgatccgccagggcaactggcaccaggtgctggtcttcacccgcatgaagcacggcgcc
aaccgcctggccgaattcctgaacaaggaagacatcagcgccatggccatccacggcaac
aagagccagggcgcccgcaccaaggcgctgtcggagttcaaggccggcaccctgcaggtg
ctggtggccaccgacatcgccgcccgcggcatcgacatcgaccagctgccgcatgtcgtc
aacttcgagctgcccaacgtgcccgaggactatgtgcaccgcatcggccgcaccggccgc
gccggcgcccagggcgaggccatctcgctggtctgcgtggacgaggagcagttcctgcgc
gacatcgagaagctgatcaagcgcgaaattcccaaggagctggtgccgggcttcgagccg
ccggccggcgagaaggccgagcccatcgtgctgggccggcgcatgaccatcggcgtgggc
gcgaatcgcggcggcggtggtggcggccgcggtggctcgggccggccgggcggcgatggc
cgcggacgcccgggccagccgggtcacggcaacccggcccgctcggccgggcagggacag
cgccaaggccagggccagggccagcgccagggcggccccgacagcggccgccgcgatcgc
ccggcggcaccgggcggcgcgcgccccccccgcacgggccgctga
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