Ideonella dechloratans: LRM40_13860
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Entry
LRM40_13860 CDS
T07737
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
idc
Ideonella dechloratans
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
idc03016
]
LRM40_13860
Enzymes [BR:
idc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LRM40_13860
Transfer RNA biogenesis [BR:
idc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LRM40_13860
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UFU11900
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All DBs
Position
2986716..2988746
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AA seq
676 aa
AA seq
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MYALFDDAGKFLAGRVMSEADSSMQIELDSGKRVKVKNANVLLRFDKPQPADLIAAAQAK
AGEIDLDLAWEFAPEGEFGFADLARDYFSASAGPELQAAALFRLFEAPHYFRRAGKGQFK
KAPEETIKAALLAIERKKQLAAQIEAWAAELVAGQCPAPVREQLYKILFKPDKNAPEYKA
VVDAAKQSQRAPLDLLKDAGAITSPYQFHWRRFLFEQFPKGTGFPPLEAPAIADELPLAP
VQAFSIDDSQTTEIDDALSVTGLGSGEVVFGVHIAAPGLAVLPDSPVDKVARERLSTVYM
PGWKLTMLPDAVVQAYTLDEGRDCPAVSLYVTLDEATLAIKKSETRLERVPIAANLRHDQ
LDEVITEATLTGEAVADYPFAAELAFCFRLARQLKAAREVVRGKPENFNRPDYNFRLDGN
SGEPDGSETVRISERKRGAPLDLIVSEAMILANSTWGGWLAELGVPGIYRSQASLAPGVK
VRMGTKALPHAGMGVAQYTWATSPLRRYVDLVNQWQIIACARHGRTAALAAHFKPKDATL
FSIISGFDGAYSAYNGFQSAIERFWTLRWIEQQGVTELDAAVLKDGLVRADTLPLVFRAL
GTESFPRGTRVRVRVTGMDLLTLELHASLAARLDDEVAPTEAEDSEGEDDTPTTGLTLAI
NLDEAGEDAPPAAPAA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccctgttcgatgatgccggcaaatttctggccggccgtgtgatgtccgaagcc
gacagctcgatgcagatcgagctcgattcgggcaagcgcgtcaaagtgaagaatgccaac
gtgctgctgcgcttcgacaagccgcagccggcagacctgatcgcggccgcgcaggccaag
gccggcgagatcgatctcgacctggcctgggagttcgcgcccgagggcgagttcggcttt
gccgacctggcacgcgactatttcagcgcctccgccgggccggagctgcaggccgccgcc
ctgttccgcctgttcgaggcgccccactacttccgccgtgccggcaagggccagttcaag
aaggccccggaggagaccatcaaggccgccctgctggccatcgagcgcaagaagcagctg
gccgcccagatcgaggcctgggccgccgagctggtggccggccagtgtccggccccggtg
cgcgagcagctctacaagatcctgttcaagcccgacaagaacgcgcccgaatacaaggcc
gtggtcgatgccgccaagcagagccagcgcgccccgctggacctgctcaaggacgccggc
gccatcaccagcccctaccagttccactggcggcgcttcctgttcgagcagtttcccaag
ggcacgggctttccgccgctggaggccccggccattgccgacgagctgccgctggccccg
gtgcaggccttctcgatcgacgattcgcagaccacggagatcgacgacgcgctgtcggtc
accggcctgggctcgggcgaggtggtgttcggcgtgcacattgccgcgccgggcctggcc
gtgctgcccgattcgccggtggacaaggtggcccgcgagcgcctgtccaccgtctacatg
ccgggctggaagctcaccatgctgcccgacgcggtggtgcaggcctacacactggacgag
ggccgagactgccccgccgtcagcctgtacgtgacgctggacgaggccacgctggcaatc
aagaagagcgagacccggctggagcgggtgcccatcgcggccaacctgcgccacgaccag
ctcgacgaggtcatcaccgaggccacgctgaccggcgaggcggtggccgactaccccttc
gcggccgaactggccttctgcttccgcctggcacgccagctcaaggccgcgcgcgaggtg
gtgcgcggaaagcccgagaacttcaaccggccggactacaacttccggctggacggaaac
agcggcgaacccgacggcagcgagacggtgcgcatcagcgagcgcaaacgtggcgcaccg
ctggacctgatcgtctcggaagcgatgatcctggccaacagcacctggggtggctggctg
gccgaactgggcgtgcccggcatctaccgcagtcaggccagcctggccccgggcgtgaag
gtgcgcatgggcaccaaggccctgccgcacgccggcatgggtgtggcgcagtacacctgg
gccacctcgccgctgcgccgctacgtggacctggtcaaccagtggcagatcatcgcctgc
gcccgccacggccgcaccgccgcgctggccgcccacttcaagcccaaggacgcgacgctg
ttctcgatcatctcgggctttgacggcgcctactcggcctacaacggcttccagtccgcc
atcgagcgcttctggacgctgcgctggatcgagcagcagggcgtcaccgagctggacgcc
gccgtgctcaaggacggcctggtgcgggccgacaccctgccgctggtcttccgcgccctg
ggcaccgagagcttcccgcgcggcacccgcgtgcgggtgcgcgtcaccggcatggacctg
ctgacgctggagctgcacgccagcctggccgcccgcctggatgacgaggtcgcgccgacc
gaggccgaggacagcgagggcgaggatgacaccccgaccaccggcctgaccctggccatc
aacctcgacgaggccggcgaggacgcgccgcccgccgcccccgccgcctga
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