Ideonella dechloratans: LRM40_13935
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Entry
LRM40_13935 CDS
T07737
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
idc
Ideonella dechloratans
Pathway
idc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LRM40_13935
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
idc02022
]
LRM40_13935
02035 Bacterial motility proteins [BR:
idc02035
]
LRM40_13935
Two-component system [BR:
idc02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
LRM40_13935
Bacterial motility proteins [BR:
idc02035
]
Pilus system
Twitching motility proteins
LRM40_13935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_16
AAA_5
HTH_50
AAA
AAA_7
HTH_23
Motif
Other DBs
NCBI-ProteinID:
UFU09394
LinkDB
All DBs
Position
complement(3003801..3005273)
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AA seq
490 aa
AA seq
DB search
MNESHSTGRVLVVDDEPDLLTLYELSLLREGHEVETAASVGEAWALLAQRRFSLVITDMR
LPDGSGMTLMHKLEEARRPEKVIVITAYGSAENAVEALKAGAFDYLTKPVDLRQFRSVVA
AALGRVATPVPPAQPAGPLSQSALARLVGRSAAMGEVRVLVEKVARSMAPVLVQGESGTG
KELVARAIHEVSPRSGQAFVAVNCGAIPEHLLEAEFFGYRKGAFTGAQEDRAGFFQAAHG
GTLFLDEIGDLPLAMQSKLLRVIQERAVRPVGAVSETPLNVRIVSATHKDLAAEVAAGRF
RQDLFYRLNVIRIAVPPLRERLQDLDDICQALLERIARDAGVWPSPQLSAEARARLSRYH
FPGNVRELENLLHRAVALSTHEVIEAGDLGLPETLLGEPHVDGEALSLPARPSVPTDAPS
DDSEAGPLPTDLAAYLDEVERAILVRALRQHGFNRTAAGASLGLSLRQMRYRMARLAITE
GDDGPTAEAP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatcccattcgaccggccgcgtgctcgtggtcgatgacgagcccgacctgctg
accctgtacgagctcagcctgctgcgcgagggccacgaggtcgagaccgcggccagcgtc
ggcgaggcctgggccctgctggcgcagcgccgcttcagcctggtcatcaccgacatgcgc
ctgcccgatggcagcggcatgacgctgatgcacaaattggaagaggcgcgccggccggag
aaggtcatcgtcatcaccgcctacggctcggccgagaacgcggtggaggccctcaaggcg
ggcgccttcgactacctcaccaagccggtggacctgcggcagttccgctccgtggtggcc
gcggccctgggccgggtggccacgcccgtgccgccggcccagccggccgggccgctgtcg
cagtcggcgctggcccgactggtgggccgctcggcggccatgggcgaagtgcgggtgctg
gtcgagaaggtggcgcgcagcatggcgccggtgctggtgcagggcgagtccggcaccggc
aaggaactggtggcccgcgccatccacgaggtcagcccccgctcgggccaggccttcgtg
gcggtcaactgcggcgccattccggagcatctgctggaggccgagttcttcggctaccgc
aagggcgccttcaccggggcgcaggaagaccgggccggcttcttccaggccgcgcatggt
ggcaccctgttcctcgacgagatcggcgacctgcctctggccatgcagtccaagctgctg
cgggtgatccaggagcgcgcggtgcggccggtgggcgcggtgagcgaaacgccgctgaac
gtccgcatcgtcagcgccacccacaaggacctggcagccgaggtggcggccggccgcttc
cggcaggatctcttctaccgcctcaacgtcatccgcatcgcggtgccgcccctgcgcgag
cgcctgcaggatctggacgacatctgccaggccctgctcgagcgcatcgcgcgcgatgcg
ggggtctggccttcgccccagctgtcggccgaggcccgtgcccgtctgtcgcgctaccac
ttcccgggcaatgtgcgcgaactggagaacctgctgcaccgggccgtggcgctgagcacc
cacgaagtcatcgaggccggtgacctgggcttgcccgagaccctgctgggggagccgcac
gtggacggtgaggccctgtccctgccggcgcgcccgtccgtgccgaccgacgcgccgtcg
gacgacagcgaggccgggcccctgcccacggatctggcggcctacctcgacgaggtggag
cgggccattctggtgcgggccctgcgtcagcatggcttcaaccgcacggccgccggcgcc
agcctggggctgtcgctgcggcagatgcgctaccgcatggcccgcctggccatcaccgaa
ggcgacgacgggccgacggcggaggccccatga
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