Ideonella dechloratans: LRM40_15515
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Entry
LRM40_15515 CDS
T07737
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
idc
Ideonella dechloratans
Pathway
idc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRM40_15515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idc03021
]
LRM40_15515 (rpoC)
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_15515 (rpoC)
Enzymes [BR:
idc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRM40_15515 (rpoC)
Transcription machinery [BR:
idc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRM40_15515 (rpoC)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRM40_15515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Aldolase
Motif
Other DBs
NCBI-ProteinID:
UFU09693
LinkDB
All DBs
Position
complement(3331281..3335504)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRQEFGDEFVALM
GAEGIQKLLADMDLDVEIDRLRNDMTGSELKVKKNSKRLKVMEAFKKSGIKPEWMIMTVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEARA
LMLASNNVLFPASGEPSIVPSQDVVLGLYYSTRERTNAKGEGMVFSDTVELRRALDCGAV
EITAKISVRLTEWTKDDNGEFQPQLKLVETTVGRALLSEILPKGLPFSNLNKALKKKEIS
KLINTSFRKCGLKETVVFADKLLQSGFRLATRAGISIAIEDMLVPPQKVGLIDRAEKEVK
EIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMGQLSKEKVIDRNGKEVDQESFNSI
YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKG
LADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTEAGFAMRALVEGGEVIESLRDRVLGR
VTAVEVVHPETQQVLIDAGTMLDEDTLDAIESAGVDEIKVRTPLTCETRYGLCAKCYGRD
LGRGGLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVDAKSDGIIGFNA
TMRYVTNGKGELVVISRSGEIVITDPHGRERERHKVPYGAILNVKADQTIKAGTILGNWD
PLTRPIITEFAGKAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLLD
ANGQEVKIPGTDHSVTIGFQVGALIQIRDGQDLAPGEVLARIPVEGQKTRDITGGLPRVA
ELFEARSPKDKGTLAEITGTVSFGKETKGKVRLQITDPDGKVWEELVPKEKNILVHEGQV
VNRGELIVDGAADPQDILRLLGVEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRR
VQIVNPGDSSYIAGEQVERSELFITNEKLRSEDKIPATYADVLLGITKASLSTDSFISAA
SFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHQARKAKEEMDETERRAI
ALQEAEELASAQLASLDAASGTEPSAD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttgctggacctgttcaagcagttcacccccgacgagcacttcgacgcgatc
aagattgggctggcctcgcccgagaagattcgctcgtggtccttcggtgaggtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtcacccagaccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtcctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtggtggacccgggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgcgaagcgccaggagttcggtgacgagttcgtcgcgctgatg
ggtgccgaaggcatccagaagctgctggccgacatggacctggacgtcgagatcgaccgc
ctgcgcaacgacatgaccggcagcgagctgaaggtcaagaagaacagcaagcgcctgaag
gtcatggaggccttcaagaagtcgggcatcaagcccgagtggatgatcatgacggtgctg
ccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgtttcgccacc
tcggacctgaacgacctttaccgtcgcgtcatcaaccgcaacaaccgtctggcccgcctg
ctggaactcaaggcccctgagatcatcgtgcgcaacgaaaagcgcatgctgcaggaagcc
gtggacagcctgctggacaacggccgtcgcggcaaggccatgaccggcgcgaacaagcgt
gccctcaagtcgctggccgacatgatcaagggcaagtcgggccgcttccgtcagaacctg
ctgggcaagcgcgtcgactactccggccgttccgtcatcaccgtgggcccgaccctcaag
ctgcaccagtgcggcctgcccaagctgatggccctggagctgttcaagcccttcatcttc
tcgcgcctggaggcgatgggcatcgccaccaccatcaaggcggcgaagaaggaagtggaa
tcgggcacgccggtggtctgggacatccttgaagaagtcatcaaggaacacccggtcatg
ctgaaccgcgccccgacgctgcaccgtctgggcatccaggccttcgagccggtgctgatc
gaaggcaaggccatccagctgcacccgctggtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgtgcacgtgccgctgtccatcgaagcgcagatggaagcccgcgcc
ctgatgctggcctccaacaacgtgctgttcccggcctcgggcgagccgtccatcgtgccg
tcgcaggacgtggtgctgggcctgtactactcgacccgcgagcgcaccaacgccaagggc
gagggcatggtcttctccgacaccgtggaactgcgccgtgcgctggactgcggcgccgtg
gagatcaccgccaagatcagcgtgcgcctgaccgagtggaccaaggacgacaacggtgaa
ttccagccccagctcaagctggtggagaccaccgtgggccgtgcgctgctgtcggagatc
ctgcccaagggcctgcccttctccaacctcaacaaggccctgaagaagaaggagatcagc
aagctgatcaacacctccttccgcaagtgcggcctgaaggaaaccgtcgtcttcgccgac
aagctgctgcagtcgggcttccgcctggccacgcgcgccggcatctcgatcgccatcgag
gacatgctggtgccgccgcagaaggtgggcctgatcgaccgcgccgagaaggaagtcaag
gagatcgagcagcagtacgtctcgggtctcgtgaccgccggcgagcgctacaacaaggtc
gtggacatctggggcaagaccggtgacgaggtgggcaaggtcatgatgggccagctctcc
aaggaaaaggtcatcgaccgcaacggcaaggaagtggatcaggagtccttcaactccatc
tacatgatggccgactccggcgcccggggttctgccgcgcagatccgccagctcgccggg
atgcggggcctgatggccaagccggacggctcgatcatcgagacccccatcaccgcgaac
ttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggtgcccgtaagggc
ctggcggacacggcgctgaagaccgcgaattccggctacctgacccgtcgtctggtggac
gtgacccaggatctggtggtgaccgaggacgattgcggcaccgaggccggcttcgcgatg
cgcgcgctggtcgaaggcggtgaggtcatcgaatccctgcgcgaccgcgtgctgggccgc
gtgaccgccgtcgaagtggtgcacccggaaacccagcaggtgctgatcgacgccggcacc
atgctggacgaggacaccctggacgccatcgagtcggccggcgtggacgagatcaaggtc
cgcactccgctgacttgcgagacccgttacggtctgtgcgccaagtgctacggccgcgat
ctgggccgcggtggcctggtcaacaccggtgaggctgtgggcgtgatcgccgcgcagtcg
atcggcgagccgggcacgcagctgaccatgcggaccttccacatcggtggtgcggcctcg
cgcgcggccatcgcctccagtgtcgacgccaagtcggacggcatcatcggcttcaacgct
acgatgcgctacgtcacgaacggcaagggcgagctggtggtgatctcgcgttcgggcgaa
atcgtcatcaccgacccgcacggccgtgagcgcgagcgtcacaaggtgccgtacggcgcg
atcctgaacgtcaaggccgaccagaccatcaaggccggcaccatcctgggcaactgggac
ccgctgacccgcccgatcatcacggaattcgccggcaaggcgaagttcgagaacgtcgag
gaaggtgtcaccgtggccaagcaggtggacgaggtcaccggcctgtccaccctggtggtg
atcgaccccaagcgccgcggcgccgccaaggtggtgcgcccccaggtcaagctgctggat
gccaacggccaggaagtgaagatcccgggcaccgaccactcggtgaccatcggcttccag
gtcggcgcgctgatccagatccgcgacggccaggacctggccccgggtgaagtgctggcc
cgcatcccggtcgaaggtcagaagacccgtgacatcaccggcggtctgccgcgggtggcc
gagctgttcgaagcccgttcgcccaaggacaagggcacgctggccgagatcaccggcacg
gtgtccttcggcaaggagaccaagggcaaggtgcgcctgcagatcaccgacccggacggc
aaggtctgggaagagctggtgcccaaggaaaagaacatcctggtgcacgaaggtcaggtg
gtgaaccgcggcgaactgatcgtcgacggcgcggccgatccgcaggacatcctgcgtctg
ctgggcgtcgaggaactggcccgctacatcgtcgacgaggtgcaggacgtctaccgtctg
cagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgccgc
gtgcagatcgtcaacccgggcgactcgtcctacatcgccggcgagcaggtggagcgctcg
gagctgttcatcaccaacgagaagctgcgcagcgaggacaagatccccgcgacctacgcc
gacgtgctgctgggcatcaccaaggcgtccctgtcgaccgactcgttcatctccgcggcg
tccttccaggaaaccacccgcgtgctgaccgaagcggccatcatgggcaagcgcgacgag
ctgcgtggcctgaaggaaaacgtgatcgtgggtcgcctgattccggccggcaccggcatg
gccttccaccaggcccgcaaggccaaggaagagatggacgagaccgagcgtcgtgccatc
gccctgcaggaagccgaggaactcgcctcggcccagctggccagcctggatgccgcctcc
ggcaccgagccgagcgccgactga
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integrated database retrieval system
