Ideonella dechloratans: LRM40_17000
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Entry
LRM40_17000 CDS
T07737
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
idc
Ideonella dechloratans
Pathway
idc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRM40_17000 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idc03019
]
LRM40_17000 (recQ)
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_17000 (recQ)
Enzymes [BR:
idc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRM40_17000 (recQ)
Messenger RNA biogenesis [BR:
idc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRM40_17000 (recQ)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRM40_17000 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HCV_capsid
Motif
Other DBs
NCBI-ProteinID:
UFU09971
LinkDB
All DBs
Position
complement(3652876..3654762)
Genome browser
AA seq
628 aa
AA seq
DB search
MPAPLSSAPLDILQEVFGYTAFRGHQAAIVQQVIDGGDALVLMPTGGGKSLCYQIPAIAR
HRAGLGVAVVVSPLIALMQDQVGALEEAGVHAAFLNSSLDLEGVQHVERELLSGRLVTLY
AAPERITHPRFLAMLDSLQERGKLSLFAIDEAHCVSQWGHDFREEYLQLGLLAERYPGVP
RIALTATADEHTRADIVERLALHTAQTFISSFDRPNIRYTIVEKDNARAQLLRWLQDEHA
GEAGIVYCQSRRKVEETAEWLQDQGIAALPYHAGLDAEVRRRHQDRFLREDALVMVATVA
FGMGIDKPDVRFVAHLDLPKNIEGYYQETGRAGRDGEPAQAWMAYGLADVVNQRRMIDES
TAEDEFKRLQRGKLDALLALCESLDCRRVRLLQYFGEERPEGWRCMNCDNCLEQPARWDA
TEAARMALSCIYRCHQHSGFGFGSGHLIDVLRGQSTEKTRQRGHEQLSTWGIGRDLSEAQ
WRGVIRQLIALGHVLSEGEYNTLALGESARAVLRGEVKIELREPKAPTPRGRRSRSGAGS
SRSTAAPVLATLDAEGQARFAALKAWRAEVAREHNLPAYIVFTDATLRQMAEQAPTSLTE
LGQVSGVGAKKLEAYGRQILRVLDEQPQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccccgctctcgtccgctcccctcgacatcctgcaggaagtcttcggctacacc
gccttccgcggccaccaggccgccatcgtgcagcaggtgatcgacggcggcgacgcgctc
gtgctgatgcccaccggtggcggcaagagcctgtgctaccagattcccgccatcgcccgc
caccgcgccggcctgggcgtggccgtggtggtcagcccgctgatcgcgctgatgcaggac
caggtcggcgcgctggaagaggccggggtgcacgcggccttcctgaactcctcgctggac
ctggagggcgtgcagcacgtcgagcgcgagttgctgtccggccgtctggtgacgctctat
gccgcgcccgagcgcatcacccacccgcgcttcctggccatgctcgactcgctgcaggag
cgtggcaagctgagcctgttcgccatcgacgaggcgcattgcgtgagccagtggggccac
gacttccgcgaggaatacctgcagctgggcctgctggccgaacgctaccccggcgtgccg
cgcatcgcgctgacggccaccgccgacgagcacacccgggccgacatcgtcgagcgcctg
gcgctgcacacggcgcagaccttcatcagcagcttcgaccggcccaacatccgctacacc
atcgtcgagaaggacaacgcgcgggcccaactgctgcgctggctgcaggacgagcatgcc
ggcgaggccggcatcgtctactgccagagccggcgcaaggtggaggagacggccgagtgg
ctgcaggaccagggcattgccgcgctgccctaccacgccgggctggacgccgaggtgcgc
cggcgccaccaggaccgcttcctgcgcgaggacgcgctggtgatggtggccacggtggcc
ttcggcatgggcatcgacaagcccgacgtgcgcttcgtggcccacctggacctgcccaag
aacatcgagggctactaccaggagaccggccgcgccggccgtgatggcgagccggcccag
gcctggatggcctatggcttggccgacgtggtcaaccagcgccgcatgatcgacgagagc
acggccgaggacgagttcaagcgcctgcagcgcggcaagctcgacgccctgctggcgctg
tgcgaaagcctggactgccggcgcgtgcgcctcctgcagtacttcggcgaggaacgcccc
gagggctggcgctgcatgaactgcgacaactgcctggagcagccggcccgctgggacgcc
accgaggcggcgcgcatggccctgtcctgcatctaccgctgccaccagcactcgggtttc
ggcttcggatcgggccacctgatcgacgtgctgcgtggccagtccaccgagaaaacgcgc
cagcgcggccacgagcagctctccacctggggcatcggccgcgacctcagcgaggcccag
tggcgcggcgtcatccgccagctgatcgccctgggccatgtgctcagcgagggcgagtac
aacaccctggcactgggcgagagcgcccgcgccgtgctgcgcggcgaggtaaagatcgag
ctgcgcgagcccaaggcaccgacgccacgcggccgccgctcgcgcagcggcgccggcagc
agccgcagcacggccgcgccagtgctggccacgctggacgccgaaggccaggcccgcttc
gccgccctcaaggcctggcgggccgaggtggcgcgcgagcacaacctgccggcctacatc
gtcttcaccgacgccacgctgcgccagatggccgagcaggccccgacctctctcaccgaa
ctgggccaggtcagcggcgtgggcgccaagaagctggaggcctacggccgccagatcctg
cgggtgctggacgaacagccccagtga
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